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Accurate recognition of biomedical named entities is critical for medical information extraction and knowledge discovery. However, existing methods often struggle with nested entities, entity boundary ambiguity, and cross-lingual…

Computation and Language · Computer Science 2025-10-13 Tengxiao Lv , Ling Luo , Juntao Li , Yanhua Wang , Yuchen Pan , Chao Liu , Yanan Wang , Yan Jiang , Huiyi Lv , Yuanyuan Sun , Jian Wang , Hongfei Lin

We present a statistical model for German medical natural language processing trained for named entity recognition (NER) as an open, publicly available model. The work serves as a refined successor to our first GERNERMED model which is…

Computation and Language · Computer Science 2022-10-11 Johann Frei , Ludwig Frei-Stuber , Frank Kramer

Language Models (LMs) such as BERT, have been shown to perform well on the task of identifying Named Entities (NE) in text. A BERT LM is typically used as a classifier to classify individual tokens in the input text, or to classify spans of…

Computation and Language · Computer Science 2024-03-04 Edward Whittaker , Ikuo Kitagishi

Few-shot named entity recognition (NER) detects named entities within text using only a few annotated examples. One promising line of research is to leverage natural language descriptions of each entity type: the common label PER might, for…

Computation and Language · Computer Science 2024-03-22 Jonas Golde , Felix Hamborg , Alan Akbik

Popular solutions to Named Entity Recognition (NER) include conditional random fields, sequence-to-sequence models, or utilizing the question-answering framework. However, they are not suitable for nested and overlapping spans with large…

Computation and Language · Computer Science 2022-03-08 Hagen Soltau , Izhak Shafran , Mingqiu Wang , Laurent El Shafey

This paper examines the challenging problem of learning representations of entities and relations in a complex multi-relational knowledge graph. We propose HittER, a Hierarchical Transformer model to jointly learn Entity-relation…

Computation and Language · Computer Science 2021-10-07 Sanxing Chen , Xiaodong Liu , Jianfeng Gao , Jian Jiao , Ruofei Zhang , Yangfeng Ji

Recent years have witnessed a substantial increase in the use of deep learning to solve various natural language processing (NLP) problems. Early deep learning models were constrained by their sequential or unidirectional nature, such that…

Information Retrieval · Computer Science 2024-03-05 Jiajia Wang , Jimmy X. Huang , Xinhui Tu , Junmei Wang , Angela J. Huang , Md Tahmid Rahman Laskar , Amran Bhuiyan

This paper presents a comprehensive study to efficiently build named entity recognition (NER) systems when a small number of in-domain labeled data is available. Based upon recent Transformer-based self-supervised pre-trained language…

Computation and Language · Computer Science 2021-01-01 Jiaxin Huang , Chunyuan Li , Krishan Subudhi , Damien Jose , Shobana Balakrishnan , Weizhu Chen , Baolin Peng , Jianfeng Gao , Jiawei Han

Precision is of utmost importance in the realm of clinical entity extraction from clinical notes and reports. Encoder Models fine-tuned for Named Entity Recognition (NER) are an efficient choice for this purpose, as they don't hallucinate.…

Computation and Language · Computer Science 2026-03-03 Kuldeep Jiwani , Yash K Jeengar , Ayush Dhaka

Models based on the transformer architecture, such as BERT, have marked a crucial step forward in the field of Natural Language Processing. Importantly, they allow the creation of word embeddings that capture important semantic information…

Computation and Language · Computer Science 2021-01-01 Jacob Turton , David Vinson , Robert Elliott Smith

Named Entity Recognition (NER) is a crucial upstream task in Natural Language Processing (NLP). Traditional tag scheme approaches offer a single recognition that does not meet the needs of many downstream tasks such as coreference…

Computation and Language · Computer Science 2020-04-30 Wendong He , Yizhen Shao , Pingjian Zhang

We introduce CNER, an ensemble of capable tools for extraction of semantic relationships between named entities in Spanish language. Built upon a container-based architecture, CNER integrates different Named entity recognition and relation…

Computation and Language · Computer Science 2024-05-20 Jefferson A. Peña Torres , Raúl E. Gutiérrez De Piñerez

In countries that speak multiple main languages, mixing up different languages within a conversation is commonly called code-switching. Previous works addressing this challenge mainly focused on word-level aspects such as word embeddings.…

Computation and Language · Computer Science 2019-09-19 Genta Indra Winata , Zhaojiang Lin , Jamin Shin , Zihan Liu , Pascale Fung

Recurrent Neural Network models are the state-of-the-art for Named Entity Recognition (NER). We present two innovations to improve the performance of these models. The first innovation is the introduction of residual connections between the…

Computation and Language · Computer Science 2017-07-12 Quan Tran , Andrew MacKinlay , Antonio Jimeno Yepes

Named entity recognition (NER) and relation extraction (RE) are two important tasks in information extraction and retrieval (IE \& IR). Recent work has demonstrated that it is beneficial to learn these tasks jointly, which avoids the…

Computation and Language · Computer Science 2020-01-01 John Giorgi , Xindi Wang , Nicola Sahar , Won Young Shin , Gary D. Bader , Bo Wang

So far, named entity recognition (NER) has been involved with three major types, including flat, overlapped (aka. nested), and discontinuous NER, which have mostly been studied individually. Recently, a growing interest has been built for…

Computation and Language · Computer Science 2021-12-21 Jingye Li , Hao Fei , Jiang Liu , Shengqiong Wu , Meishan Zhang , Chong Teng , Donghong Ji , Fei Li

We study the problem of incorporating prior knowledge into a deep Transformer-based model,i.e.,Bidirectional Encoder Representations from Transformers (BERT), to enhance its performance on semantic textual matching tasks. By probing and…

Computation and Language · Computer Science 2021-02-23 Tingyu Xia , Yue Wang , Yuan Tian , Yi Chang

Named entity recognition (NER) is the task to detect and classify the entity spans in the text. When entity spans overlap between each other, this problem is named as nested NER. Span-based methods have been widely used to tackle the nested…

Computation and Language · Computer Science 2022-09-16 Hang Yan , Yu Sun , Xiaonan Li , Xipeng Qiu

In this paper we tackle multilingual named entity recognition task. We use the BERT Language Model as embeddings with bidirectional recurrent network, attention, and NCRF on the top. We apply multilingual BERT only as embedder without any…

Computation and Language · Computer Science 2023-10-04 Anton A. Emelyanov , Ekaterina Artemova

Speech Entity Linking aims to recognize and disambiguate named entities in spoken languages. Conventional methods suffer gravely from the unfettered speech styles and the noisy transcripts generated by ASR systems. In this paper, we propose…

Computation and Language · Computer Science 2022-09-30 Shen Huang , Yuchen Zhai , Xinwei Long , Yong Jiang , Xiaobin Wang , Yin Zhang , Pengjun Xie