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The pull-based development model facilitates global collaboration within open-source software projects. However, whereas it is increasingly common for software to depend on other projects in their ecosystem, most research on the pull…

Software Engineering · Computer Science 2025-10-28 Willem Meijer , Mirela Riveni , Ayushi Rastogi

Modern software systems rely on dependency networks of reusable libraries, where breaking changes propagate and cause downstream consumers to fail. Despite growing research across ecosystems, no comprehensive synthesis exists. We conduct a…

Software Engineering · Computer Science 2026-05-26 Juntao Chen , Tingting Bi , Yanlin Wang , Patanamon Thongtanunam

De novo assembly enables investigations of unknown genomes, paving the way for personalized medicine and disease management. However, it faces immense computational challenges arising from the excessive data volumes and algorithmic…

Hardware Architecture · Computer Science 2025-05-14 Heewoo Kim , Sanjay Sri Vallabh Singapuram , Haojie Ye , Joseph Izraelevitz , Trevor Mudge , Ronald Dreslinski , Nishil Talati

Third-party package usage has become a common practice in contemporary software development. Developers often face different challenges, including choosing the right libraries, installing errors, discrepancies, setting up the environment,…

Software Engineering · Computer Science 2022-03-01 Syful Islam , Dong Wang , Raula Gaikovina Kula , Takashi Ishio , Kenichi Matsumoto

Reusable software components, typically distributed as packages, are a central paradigm of modern software development. The JavaScript ecosystem serves as a prime example, offering millions of packages with their use being promoted as…

Software Engineering · Computer Science 2026-01-26 Ben Swierzy , Marc Ohm , Michael Meier

Language-based ecosystems (LBE), i.e., software ecosystems based on a single programming language, are very common. Examples include the npm ecosystem for JavaScript, and PyPI for Python. These environments encourage code reuse between…

Cryptography and Security · Computer Science 2021-12-01 Ruturaj K. Vaidya , Lorenzo De Carli , Drew Davidson , Vaibhav Rastogi

Modern software systems are expected to be secure and contain all the latest features, even when new versions of software are released multiple times an hour. Each system may include many interacting packages. The problem of installing…

Software Engineering · Computer Science 2018-11-15 Ran Ben Basat , Maayan Goldstein , Itai Segall

Dependency bloat is a persistent challenge in Python projects, which increases maintenance costs and security risks. While numerous tools exist for detecting unused dependencies in Python, removing these dependencies across the source code…

Understanding the causes of software defects is essential for reliable software maintenance and ecosystem stability. However, existing bug datasets do not distinguish between issues originating within a project from those caused by external…

Software Engineering · Computer Science 2026-02-24 Tanner Wright , Adams Chen , Gema Rodríguez-Pérez

High performance computing (HPC) software ecosystems are inherently heterogeneous, comprising scientific applications that depend on hundreds of external packages, each with distinct build systems, options, and dependency constraints. Tools…

Software Engineering · Computer Science 2025-11-11 Caetano Melone , Daniel Nichols , Konstantinos Parasyris , Todd Gamblin , Harshitha Menon

Python software development heavily relies on third-party packages. Direct and transitive dependencies create a labyrinth of software supply chains. While it is convenient to reuse code, vulnerabilities within these dependency chains can…

Cryptography and Security · Computer Science 2026-03-11 Jacob Mahon , Chenxi Hou , Zhihao Yao

Code reuse is an important part of software development. The adoption of code reuse practices is especially common among Node.js developers. The Node.js package manager, NPM, indexes over 1 Million packages and developers often seek out…

Software Engineering · Computer Science 2023-01-03 Brittany Reid , Marcelo d`Amorim , Markus Wagner , Christoph Treude

Background: Open source software ecosystems exhibit dense dependency networks in which maintenance degradation of structurally central packages can propagate widely. Despite increasing attention to open source sustainability, existing…

Software Engineering · Computer Science 2026-05-11 Alexandros Tsakpinis , Emil Schwenger , Alexander Pretschner

Pre-trained models (PTMs) are machine learning models that have been trained in advance, often on large-scale data, and can be reused for new tasks, thereby reducing the need for costly training from scratch. Their widespread adoption…

Software Engineering · Computer Science 2026-02-19 Jerin Yasmin , Wenxin Jiang , James C. Davis , Yuan Tian

To comply with high productivity demands, software developers reuse free open-source software (FOSS) code to avoid reinventing the wheel when incorporating software features. The reliance on FOSS reuse has been shown to improve productivity…

Software Engineering · Computer Science 2025-06-19 Haya Samaana , Diego Elias Costa , Ahmad Abdellatif , Emad Shihab

Dependency management in modern software development poses many challenges for developers who wish to stay up to date with the latest features and fixes whilst ensuring backwards compatibility. Project maintainers have opted for varied, and…

Software Engineering · Computer Science 2021-10-19 Abbas Javan Jafari , Diego Elias Costa , Rabe Abdalkareem , Emad Shihab , Nikolaos Tsantalis

The management of third-party package dependencies is crucial to most technology stacks, with package managers acting as brokers to ensure that a verified package is correctly installed, configured, or removed from an application. Diversity…

Software Engineering · Computer Science 2021-08-16 Syful Islam , Raula Gaikovina Kula , Christoph Treude , Bodin Chinthanet , Takashi Ishio , Kenichi Matsumoto

Background: Modern software uses many third-party libraries and frameworks as dependencies. Known vulnerabilities in these dependencies are a potential security risk. Software composition analysis (SCA) tools, therefore, are being…

Software Engineering · Computer Science 2021-09-02 Nasif Imtiaz , Seaver Thorne , Laurie Williams

Many combinatorial optimization problems entail a number of hierarchically dependent optimization problems. An often used solution is to associate a suitably large cost with each individual optimization problem, such that the solution of…

Logic in Computer Science · Computer Science 2009-04-02 Josep Argelich , Ines Lynce , Joao Marques-Silva

As modern software development increasingly relies on reusable libraries and components, managing dependencies has become critical for ensuring software stability and security. However, challenges such as outdated dependencies, missed…

Software Engineering · Computer Science 2025-04-01 Barisha Chowdhury , Md Fazle Rabbi , S. M. Mahedy Hasan , Minhaz F. Zibran