Related papers: Efficient k-clique Listing with Set Intersection S…
We developed a flexible parallel algorithm for graph summarization based on vertex-centric programming and parameterized message passing. The base algorithm supports infinitely many structural graph summary models defined in a formal…
The identification of homologous gene families across multiple genomes is a central task in bacterial pangenomics traditionally requiring computationally demanding all-against-all comparisons. PanDelos addresses this challenge with an…
Clustering is an important tool in data analysis, with K-means being popular for its simplicity and versatility. However, it cannot handle non-linearly separable clusters. Kernel K-means addresses this limitation but requires a large kernel…
The concept of $k$-defective clique, a relaxation of clique by allowing up-to $k$ missing edges, has been receiving increasing interests recently. Although the problem of finding the maximum $k$-defective clique is NP-hard, several…
The maximum clique problem is a well known NP-Hard problem with applications in data mining, network analysis, informatics, and many other areas. Although there exist several algorithms with acceptable runtimes for certain classes of…
Efficient layout of large-scale graphs remains a challenging problem: the force-directed and dimensionality reduction-based methods suffer from high overhead for graph distance and gradient computation. In this paper, we present a new graph…
The $k$-core decomposition in a graph is a fundamental problem for social network analysis. The problem of $k$-core decomposition is to calculate the core number for every node in a graph. Previous studies mainly focus on $k$-core…
With the rapid growth of unstructured and semistructured data, parallelizing graph algorithms has become essential for efficiency. However, due to the inherent irregularity in computation, memory access patterns, and communication, graph…
Biomedical knowledge graphs underwrite drug repurposing and clinical decision support, yet the upstream ontologies they depend on update on independent cycles that add millions of edges and deprecate hundreds of thousands more between…
We show an $\tilde{O}(n^{p/(p+2)})$-round algorithm in the \congest model for \emph{listing} of $K_p$ (a clique with $p$ nodes), for all $p =4, p\geq 6$. For $p = 5$, we show an $\tilde{O}(n^{3/4})$-round algorithm. For $p=4$ and $p=5$, our…
Semidefinite programming (SDP) is a powerful tool for tackling a wide range of computationally hard problems such as clustering. Despite the high accuracy, semidefinite programs are often too slow in practice with poor scalability on large…
We address the problem of enumerating all temporal k-cores given a query time range and a temporal graph, which suffers from poor efficiency and scalability in the state-of-the-art solution. Motivated by an existing concept called core…
Cohesive subgraph mining is a fundamental problem in graph theory with numerous real-world applications, such as social network analysis and protein-protein interaction modeling. Among various cohesive subgraphs, the $\gamma$-quasi-clique…
Given a graph $G$, a vertex switch of $v \in V(G)$ results in a new graph where neighbors of $v$ become nonneighbors and vice versa. This operation gives rise to an equivalence relation over the set of labeled digraphs on $n$ vertices. The…
In order to support the real-time interaction with LLMs and the instant search or the instant recommendation on social media, it becomes an imminent problem to build a k-NN graph or an indexing graph for the massive number of vectorized…
Class Incremental Learning (CIL) aims to enable models to learn new classes sequentially while retaining knowledge of previous ones. Although current methods have alleviated catastrophic forgetting (CF), recent studies highlight that the…
Cut-based directed graph (digraph) clustering often focuses on finding dense within-cluster or sparse between-cluster connections, similar to cut-based undirected graph clustering methods. In contrast, for flow-based clusterings the edges…
Dell, Lapinskas and Meeks [DLM SICOMP 2022] presented a general reduction from approximate counting to decision for a class of fine-grained problems that can be viewed as hyperedge counting or detection problems in an implicit hypergraph,…
Spatial co-location pattern mining refers to the task of discovering the group of objects or events that co-occur at many places. Extracting these patterns from spatial data is very difficult due to the complexity of spatial data types,…
From social science to biology, numerous applications often rely on graphlets for intuitive and meaningful characterization of networks at both the global macro-level as well as the local micro-level. While graphlets have witnessed a…