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Thin and elongated filamentous structures, such as microtubules and actin filaments, often play important roles in biological systems. Segmenting these filaments in biological images is a fundamental step for quantitative analysis. Recent…

Computer Vision and Pattern Recognition · Computer Science 2026-04-01 Yi Liu , Yichi Zhang

We advocate the use of qualitative models in the analysis of large biological systems. We show how qualitative models are linked to theoretical differential models and practical graphical models of biological networks. A new technique for…

Molecular Networks · Quantitative Biology 2007-05-23 Philippe Veber , Michel Le_Borgne , Anne Siegel , Sandrine Lagarrigue , Ovidiu Radulescu

Graphs are essential representations of many real-world data such as social networks. Recent years have witnessed the increasing efforts made to extend the neural network models to graph-structured data. These methods, which are usually…

Machine Learning · Computer Science 2018-11-07 Yao Ma , Ziyi Guo , Zhaochun Ren , Eric Zhao , Jiliang Tang , Dawei Yin

3D data that contains rich geometry information of objects and scenes is valuable for understanding 3D physical world. With the recent emergence of large-scale 3D datasets, it becomes increasingly crucial to have a powerful 3D generative…

Computer Vision and Pattern Recognition · Computer Science 2020-12-29 Jianwen Xie , Zilong Zheng , Ruiqi Gao , Wenguan Wang , Song-Chun Zhu , Ying Nian Wu

Finding patterns in graphs is a fundamental problem in databases and data mining. In many applications, graphs are temporal and evolve over time, so we are interested in finding durable patterns, such as triangles and paths, which persist…

Databases · Computer Science 2024-03-26 Pankaj K. Agarwal , Xiao Hu , Stavros Sintos , Jun Yang

Graphs and networks are a key research tool for a variety of science fields, most notably chemistry, biology, engineering and social sciences. Modeling and generation of graphs with efficient sampling is a key challenge for graphs. In…

Machine Learning · Computer Science 2019-09-26 Ruud van Deursen , Guillaume Godin

Generative AI models have revolutionized various fields by enabling the creation of realistic and diverse data samples. Among these models, diffusion models have emerged as a powerful approach for generating high-quality images, text, and…

Computer Vision and Pattern Recognition · Computer Science 2024-02-27 Gaurav Raut , Apoorv Singh

Training deep learning models that generalize well to live deployment is a challenging problem in the financial markets. The challenge arises because of high dimensionality, limited observations, changing data distributions, and a low…

Statistical Finance · Quantitative Finance 2019-12-20 Brandon Da Silva , Sylvie Shang Shi

This work addresses the scarcity of annotated hyperspectral data required to train deep neural networks. Especially, we investigate generative adversarial networks and their application to the synthesis of consistent labeled spectra. By…

Neural and Evolutionary Computing · Computer Science 2018-06-08 Nicolas Audebert , Bertrand Le Saux , Sébastien Lefèvre

Continual learning on graph data has recently attracted paramount attention for its aim to resolve the catastrophic forgetting problem on existing tasks while adapting the sequentially updated model to newly emerged graph tasks. While there…

Machine Learning · Computer Science 2024-02-20 Xikun Zhang , Dongjin Song , Dacheng Tao

The acquisition of large-scale, high-quality data is a resource-intensive and time-consuming endeavor. Compared to conventional Data Augmentation (DA) techniques (e.g. cropping and rotation), exploiting prevailing diffusion models for data…

Computer Vision and Pattern Recognition · Computer Science 2024-03-20 Yunxiang Fu , Chaoqi Chen , Yu Qiao , Yizhou Yu

Motivated by microscopic traffic modeling, we analyze dynamical systems which have a piecewise linear concave dynamics not necessarily monotonic. We introduce a deterministic Petri net extension where edges may have negative weights. The…

Optimization and Control · Mathematics 2010-01-26 Nadir Farhi , Maurice Goursat , Jean-Pierre Quadrat

Generating temporally coherent high fidelity video is an important milestone in generative modeling research. We make progress towards this milestone by proposing a diffusion model for video generation that shows very promising initial…

Computer Vision and Pattern Recognition · Computer Science 2022-06-24 Jonathan Ho , Tim Salimans , Alexey Gritsenko , William Chan , Mohammad Norouzi , David J. Fleet

When the focus is on the relationships or interactions between entities, graphs offer an intuitive model for many real-world data. Such graphs are usually large and change over time, thus, requiring models and strategies that explore their…

Social and Information Networks · Computer Science 2024-02-07 Evangelia Tsoukanara , Georgia Koloniari , Evaggelia Pitoura , Peter Triantafillou

We present a comprehensive study of graphical log-linear models for contingency tables. High dimensional contingency tables arise in many areas such as computational biology, collection of survey and census data and others. Analysis of…

Methodology · Statistics 2016-03-15 Niharika Gauraha

When re-structuring patient cohorts into so-called population graphs, initially independent data points can be incorporated into one interconnected graph structure. This population graph can then be used for medical downstream tasks using…

Social and Information Networks · Computer Science 2023-09-20 Tamara T. Mueller , Sophie Starck , Leonhard F. Feiner , Kyriaki-Margarita Bintsi , Daniel Rueckert , Georgios Kaissis

We propose a new framework for generating cross-sectional synthetic datasets via disjoint generative models. In this paradigm, a dataset is partitioned into disjoint subsets that are supplied to separate instances of generative models. The…

Machine Learning · Computer Science 2025-07-29 Anton Danholt Lautrup , Muhammad Rajabinasab , Tobias Hyrup , Arthur Zimek , Peter Schneider-Kamp

One of the main challenges in current research on segmentation in cardiac ultrasound is the lack of large and varied labeled datasets and the differences in annotation conventions between datasets. This makes it difficult to design robust…

Image and Video Processing · Electrical Eng. & Systems 2025-02-28 Gilles Van De Vyver , Aksel Try Lenz , Erik Smistad , Sindre Hellum Olaisen , Bjørnar Grenne , Espen Holte , Håavard Dalen , Lasse Løvstakken

A deep generative model is developed for representation and analysis of images, based on a hierarchical convolutional dictionary-learning framework. Stochastic {\em unpooling} is employed to link consecutive layers in the model, yielding…

Computer Vision and Pattern Recognition · Computer Science 2015-12-25 Yunchen Pu , Xin Yuan , Andrew Stevens , Chunyuan Li , Lawrence Carin

Providing diagnostic feedback about growth is crucial to formative decisions such as targeted remedial instructions or interventions. This paper proposed a longitudinal higher-order diagnostic classification modeling approach for measuring…

Methodology · Statistics 2018-09-19 Peida Zhan , Hong Jiao , Dandan Liao