Related papers: Tree languages and branched groups
Let T be a rooted tree and Iso(T) be the group of isometries of T. Using model-theoretic tools we study closed subgroups G of Iso(T) with respect to the number of conjugacy classes of Iso(T) having representatives in G.
Phylogenetic trees are a central tool in understanding evolution. They are typically inferred from sequence data, and capture evolutionary relationships through time. It is essential to be able to compare trees from different data sources…
Tree-controlled grammars are context-free grammars where the derivation process is controlled in such a way that every word on a level of the derivation tree must belong to a certain control language. We investigate the generative capacity…
One of the major open problems in automata and logic is the following: is there an algorithm which inputs a regular tree language and decides if the language can be defined in first-order logic? The goal of this paper is to present this…
For a labeled tree on the vertex set $\set{1,2,\ldots,n}$, the local direction of each edge $(i\,j)$ is from $i$ to $j$ if $i<j$. For a rooted tree, there is also a natural global direction of edges towards the root. The number of edges…
We propose a new algebraic framework to discuss and classify recognizable tree languages, and to characterize interesting classes of such languages. Our algebraic tool, called preclones, encompasses the classical notion of syntactic…
We study the bounded regions in a generic slice of the hyperplane arrangement in $\mathbb{R}^n$ consisting of the hyperplanes defined by $x_i$ and $x_i+x_j$. The bounded regions are in bijection with several classes of combinatorial…
In this paper, we study a regular rooted coloured tree with random labels assigned to its edges, where the distribution of the label assigned to an edge depends on the colours of its endpoints. We obtain some new results relevant to this…
A tree automatic structure is a structure whose domain can be encoded by a regular tree language such that each relation is recognisable by a finite automaton processing tuples of trees synchronously. Words can be regarded as specific…
Let $\mathcal{T}_n$ be the set of trees with $n$ vertices. Suppose that each tree in $\mathcal{T}_n$ is equally likely. We show that the number of different rooted trees of a tree equals $(\mu_r+o(1))n$ for almost every tree of…
We introduce regular languages of morphisms in free monoidal categories, with their associated grammars and automata. These subsume the classical theory of regular languages of words and trees, but also open up a much wider class of…
To any rooted tree, we associate a sequence of numbers that we call the logarithmic factorials of the tree. This provides a generalization of Bhargava's factorials to a natural combinatorial setting suitable for studying questions around…
We study the enumeration of spinal tree-child phylogenetic networks, a rigid family of tree-child networks in which all internal vertices lie on a single root--to--leaf path. We provide two complementary combinatorial frameworks. First, we…
We study the question of whether a given regular language of finite trees can be defined in first-order logic. We develop an algebraic approach to address this question and we use it to derive several necessary and sufficient conditions for…
Since the early Sixties and Seventies it has been known that the regular and context-free languages are characterized by definability in the monadic second-order theory of certain structures. More recently, these descriptive…
We use the recently developed theory of forest algebras to find algebraic characterizations of the languages of unranked trees and forests definable in various logics. These include the temporal logics CTL and EF, and first-order logic over…
Using uniformization, Cantor type sets can be regarded as boundaries of rooted trees. In this setting, we show that the trace of a first-order Sobolev space on the boundary of a regular rooted tree is exactly a Besov space with an explicit…
We give an algebraic characterization of the tree languages that are defined by logical formulas using certain Lindstr\"om quantifiers. An important instance of our result concerns first-order definable tree languages. Our characterization…
In mathematical phylogenetics, the time-consistent galled trees provide a simple class of rooted binary network structures that can be used to represent a variety of different biological phenomena. We study the enumerative combinatorics of…
We introduce a generalization of parametrized Rota-Baxter algebras, which includes family and matching Rota-Baxter algebras. We study the structure needed on the set $\Omega$ of parameters in order to obtain that free Rota-Baxter algebras…