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The ability to extrapolate gene expression dynamics in living single cells requires robust cell segmentation, and one of the challenges is the amorphous or irregularly shaped cell boundaries. To address this issue, we modified the U-Net…

Quantitative Methods · Quantitative Biology 2020-01-17 Nanyan Zhu , Chen Liu , Zakary S. Singer , Tal Danino , Andrew F. Laine , Jia Guo

Retinal vessel segmentation is a vital step for the diagnosis of many early eye-related diseases. In this work, we propose a new deep learning model, namely Channel Attention Residual U-Net (CAR-UNet), to accurately segment retinal vascular…

Image and Video Processing · Electrical Eng. & Systems 2020-10-22 Changlu Guo , Márton Szemenyei , Yangtao Hu , Wenle Wang , Wei Zhou , Yugen Yi

Reliable cell segmentation and classification from biomedical images is a crucial step for both scientific research and clinical practice. A major challenge for more robust segmentation and classification methods is the large variations in…

Cell Behavior · Quantitative Biology 2017-10-31 Mo Zhang , Xiang Li , Mengjia Xu , Quanzheng Li

Live cell culture is crucial in biomedical studies for analyzing cell properties and dynamics in vitro. This study focuses on segmenting unstained live cells imaged with bright-field microscopy. While many segmentation approaches exist for…

Quantitative Methods · Quantitative Biology 2025-08-26 Surajit Das , Gourav Roy , Pavel Zun

In this paper we propose a novel deep learning-based algorithm for biomedical image segmentation which uses a sequential attention mechanism able to shift the focus of attention across the image in a selective way, allowing subareas which…

Computer Vision and Pattern Recognition · Computer Science 2019-09-30 Shohei Hayashi , Bisser Raytchev , Toru Tamaki , Kazufumi Kaneda

The advancements in deep learning technologies have produced immense contributions to biomedical image analysis applications. With breast cancer being the common deadliest disease among women, early detection is the key means to improve…

Image and Video Processing · Electrical Eng. & Systems 2022-02-04 Narinder Singh Punn , Sonali Agarwal

The automated analysis of microscopy images is a challenge in the context of single-cell tracking and quantification. This work has as goals the study of the performance of deep learning for segmenting microscopy images and the improvement…

Quantitative Methods · Quantitative Biology 2022-10-05 André O. Françani

Precise segmentation of objects with highly similar shapes remains a challenging problem in dense prediction, especially in scenarios with ambiguous boundaries, overlapping instances, and weak inter-instance visual differences. While…

Computer Vision and Pattern Recognition · Computer Science 2026-04-14 Rui Xiao

Accurate segmentation of live cell images has broad applications in clinical and research contexts. Deep learning methods have been able to perform cell segmentations with high accuracy; however developing machine learning models to do this…

Image and Video Processing · Electrical Eng. & Systems 2022-12-06 Mayur Bhandary , J. Patricio Reyes , Eylul Ertay , Aman Panda

Purpose: This paper proposes a new network framework called EAR-U-Net, which leverages EfficientNetB4, attention gate, and residual learning techniques to achieve automatic and accurate liver segmentation. Methods: The proposed method is…

Image and Video Processing · Electrical Eng. & Systems 2021-10-05 Jinke Wang , Xiangyang Zhang , Peiqing Lv , Lubiao Zhou , Haiying Wang

Detecting and segmenting individual cells from microscopy images is critical to various life science applications. Traditional cell segmentation tools are often ill-suited for applications in brightfield microscopy due to poor contrast and…

Image and Video Processing · Electrical Eng. & Systems 2020-05-20 Rituparna Sarkar , Suvadip Mukherjee , Elisabeth Labruyère , Jean-Christophe Olivo-Marin

Remote sensing image segmentation is a specific task of remote sensing image interpretation. A good remote sensing image segmentation algorithm can provide guidance for environmental protection, agricultural production, and urban…

Computer Vision and Pattern Recognition · Computer Science 2024-01-18 Jiacheng Li

The attention mechanism can refine the extracted feature maps and boost the classification performance of the deep network, which has become an essential technique in computer vision and natural language processing. However, the memory and…

Computer Vision and Pattern Recognition · Computer Science 2021-09-21 Rui Li , Shunyi Zheng , Chenxi Duan , Jianlin Su , Ce Zhang

Medical image segmentation is vital to the area of medical imaging because it enables professionals to more accurately examine and understand the information offered by different imaging modalities. The technique of splitting a medical…

Image and Video Processing · Electrical Eng. & Systems 2024-09-01 Aitik Gupta , Joydip Dhar

Various deep learning methods have been proposed to segment breast lesion from ultrasound images. However, similar intensity distributions, variable tumor morphology and blurred boundaries present challenges for breast lesions segmentation,…

Image and Video Processing · Electrical Eng. & Systems 2024-01-23 Gongping Chen , Yu Dai , Jianxun Zhang , Moi Hoon Yap

We develop a connection sensitive attention U-Net(CSAU) for accurate retinal vessel segmentation. This method improves the recent attention U-Net for semantic segmentation with four key improvements: (1) connection sensitive loss that…

Computer Vision and Pattern Recognition · Computer Science 2019-04-24 Ruirui Li , Mingming Li , Jiacheng Li , Yating Zhou

An improved model of medical image segmentation for brain tumor is discussed, which is a deep learning algorithm based on U-Net architecture. Based on the traditional U-Net, we introduce GSConv module and ECA attention mechanism to improve…

Image and Video Processing · Electrical Eng. & Systems 2024-09-23 Qiyuan Tian , Zhuoyue Wang , Xiaoling Cui

Instance segmentation is critical in biomedical imaging to accurately distinguish individual objects like cells, which often overlap and vary in size. Recent query-based methods, where object queries guide segmentation, have shown strong…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Yaroslav Prytula , Illia Tsiporenko , Ali Zeynalli , Dmytro Fishman

Deep learning (DL) based semantic segmentation methods have been providing state-of-the-art performance in the last few years. More specifically, these techniques have been successfully applied to medical image classification, segmentation,…

Computer Vision and Pattern Recognition · Computer Science 2018-05-30 Md Zahangir Alom , Mahmudul Hasan , Chris Yakopcic , Tarek M. Taha , Vijayan K. Asari

This contribution presents a deep learning method for the segmentation of prostate zones in MRI images based on U-Net using additive and feature pyramid attention modules, which can improve the workflow of prostate cancer detection and…

Image and Video Processing · Electrical Eng. & Systems 2023-09-06 Pablo Cesar Quihui-Rubio , Daniel Flores-Araiza , Miguel Gonzalez-Mendoza , Christian Mata , Gilberto Ochoa-Ruiz
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