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In this paper, I outline several conceptual and methodological issues related to modeling individual and group processes embedded in clustered/hierarchical data structures. We position multilevel modeling techniques within a broader set of…

Methodology · Statistics 2022-12-29 Amira Ibrahim El-Desokey

From physics to engineering, biology and social science, natural and artificial systems are characterized by interconnected topologies whose features - e.g., heterogeneous connectivity, mesoscale organization, hierarchy - affect their…

Physics and Society · Physics 2021-09-01 Marco Grassia , Manlio De Domenico , Giuseppe Mangioni

The analysis of temporal networks heavily depends on the analysis of time-respecting paths. However, before being able to model and analyze the time-respecting paths, we have to infer the timescales at which the temporal edges influence…

Physics and Society · Physics 2023-01-30 Luka V. Petrović , Anatol Wegner , Ingo Scholtes

In the study of dynamical systems on networks/graphs, a key theme is how the network topology influences stability for steady states or synchronized states. Ideally, one would like to derive conditions for stability or instability that…

Dynamical Systems · Mathematics 2020-07-01 Raffaella Mulas , Christian Kuehn , Jürgen Jost

Complex networks are ubiquitous in nature and play a role of paramount importance in many contexts. Internet and the cyberworld, which permeate our everyday life, are self-organized hierarchical graphs. Urban traffic flows on intricate road…

Physics and Society · Physics 2014-08-08 Francesca Di Patti , Duccio Fanelli , Francesco Piazza

Individuals interact and cooperate in structured systems. Many studies represent this structure using static networks, where each link represents a permanent connection between two nodes. However, real interactions are generally not…

Physics and Society · Physics 2025-12-23 Xiaochen Wang , Lei Zhou , Alex McAvoy , Zhenglong Tian , Aming Li

Changes in the timescales at which complex systems evolve are essential to predicting critical transitions and catastrophic failures. Disentangling the timescales of the dynamics governing complex systems remains a key challenge. With this…

Methodology · Statistics 2024-03-11 Giona Casiraghi , Georges Andres

People organize in groups and contagions spread across them. A simple stochastic process, yet complex to model due to dynamical correlations within and between groups. Moreover, groups can evolve if agents join or leave in response to…

Physics and Society · Physics 2025-05-22 Giulio Burgio , Guillaume St-Onge , Laurent Hébert-Dufresne

Hypergraphs effectively model higher-order relationships in natural phenomena, capturing complex interactions beyond pairwise connections. We introduce a novel hypergraph message passing framework inspired by interacting particle systems,…

Machine Learning · Computer Science 2025-05-27 Yixuan Ma , Kai Yi , Pietro Lio , Shi Jin , Yu Guang Wang

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

Higher-order interactions have recently emerged as a promising framework for describing new dynamical phenomena in heterogeneous contagion processes. However, a fundamental open question is how to understand their contribution from the…

Statistical Mechanics · Physics 2026-05-21 Sandro Meloni , Andrea Gabrielli , Pablo Villegas

We build information geometry for a partially ordered set of variables and define the orthogonal decomposition of information theoretic quantities. The natural connection between information geometry and order theory leads to efficient…

Information Theory · Computer Science 2016-11-18 Mahito Sugiyama , Hiroyuki Nakahara , Koji Tsuda

Simplicial complexes capture the underlying network topology and geometry of complex systems ranging from the brain to social networks. Here we show that algebraic topology is a fundamental tool to capture the higher-order dynamics of…

Disordered Systems and Neural Networks · Physics 2021-07-12 Reza Ghorbanchian , Juan G. Restrepo , Joaquín J. Torres , Ginestra Bianconi

Hypergraphs provide a fundamental framework for representing complex systems involving interactions among three or more entities. As empirical hypergraphs grow in size, characterizing their structural properties becomes increasingly…

Social and Information Networks · Computer Science 2025-06-04 Kazuki Nakajima , Masanao Kodakari , Masaki Aida

The entanglement produced by a bilinear Hamiltonian in continuous variables has been thoroughly studied and widely used. In contrast, the physics of entanglement resulting from nonlinear interaction described by partially degenerate…

Quantum Physics · Physics 2021-11-10 Da Zhang , David Barral , Yin Cai , Yanpeng Zhang , Min Xiao , Kamel Bencheikh

The network representation is becoming increasingly popular for the description of cardiovascular interactions based on the analysis of multiple simultaneously collected variables. However, the traditional methods to assess network links…

Higher-order networks effectively represent complex systems with group interactions. Existing methods usually overlook the relative contribution of group interactions (hyperlinks) of different sizes to the overall network structure. Yet,…

Physics and Society · Physics 2025-08-26 Alberto Ceria , Frank W. Takes

Here we introduce simple structures for the analysis of complex hypergraphs, hypergraph animals. These structures are designed to describe the local node neighbourhoods of nodes in hypergraphs. We establish their relationships to lattice…

Molecular Networks · Quantitative Biology 2024-07-08 Michael P. H. Stumpf

Most of the engineering and physical systems are generally characterized by differential and difference equations based on their continuous-time and discrete-time dynamics, respectively. Moreover, these dynamical models are analyzed using…

Logic in Computer Science · Computer Science 2021-11-22 Muhammad Ahmed , Adnan Rashid

Many recent deep learning-based solutions have widely adopted the attention-based mechanism in various tasks of the NLP discipline. However, the inherent characteristics of deep learning models and the flexibility of the attention mechanism…

Computation and Language · Computer Science 2023-10-09 Dairui Liu , Derek Greene , Ruihai Dong