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OLAF (Open Life Science Analysis Framework) is an open-source platform that enables researchers to perform bioinformatics analyses using natural language. By combining large language models (LLMs) with a modular agent-pipe-router…

Quantitative Methods · Quantitative Biology 2025-04-14 Dylan Riffle , Nima Shirooni , Cody He , Manush Murali , Sovit Nayak , Rishikumar Gopalan , Diego Gonzalez Lopez

This paper introduces a novel mobile sensing application - life journaling - designed to generate semantic descriptions of users' daily lives. We present AutoLife, an automatic life journaling system based on commercial smartphones.…

Artificial Intelligence · Computer Science 2024-12-24 Huatao Xu , Panrong Tong , Mo Li , Mani Srivastava

As machine learning (ML) becomes an integral part of high-autonomy systems, it is critical to ensure the trustworthiness of learning-enabled software systems (LESS). Yet, the nondeterministic and run-time-defined semantics of ML complicate…

Software Engineering · Computer Science 2025-12-10 Nan Jia , Anita Raja , Raffi Khatchadourian

Social scientists are increasingly interested in analyzing the semantic information (e.g., emotion) of unstructured data (e.g., Tweets), where the semantic information is not natively present. Performing this analysis in a cost-efficient…

Databases · Computer Science 2025-01-08 Chuxuan Hu , Austin Peters , Daniel Kang

In recent years, Large Language Models (LLMs) have emerged as transformative tools across numerous domains, impacting how professionals approach complex analytical tasks. This systematic mapping study comprehensively examines the…

Computers and Society · Computer Science 2025-08-19 Sai Sanjna Chintakunta , Nathalia Nascimento , Everton Guimaraes

Pre-training decoder-only language models relies on vast amounts of high-quality data, yet the availability of such data is increasingly reaching its limits. While metadata is commonly used to create and curate these datasets, its potential…

Computation and Language · Computer Science 2025-12-09 Sebastian Sztwiertnia , Felix Friedrich , Kristian Kersting , Patrick Schramowski , Björn Deiseroth

We illustrate how purpose-specific, graphical modeling enables application experts with different levels of expertise to collaboratively design and then produce complex applications using their individual, purpose-specific modeling…

The modeling of environmental ecosystems plays a pivotal role in the sustainable management of our planet. Accurate prediction of key environmental variables over space and time can aid in informed policy and decision-making, thus improving…

Computation and Language · Computer Science 2024-08-13 Haoran Li , Junqi Liu , Zexian Wang , Shiyuan Luo , Xiaowei Jia , Huaxiu Yao

Recently, ``textless" speech language models (SLMs) based on speech units have made huge progress in generating naturalistic speech, including non-verbal vocalizations. However, the generated speech samples often lack semantic coherence. In…

Audio and Speech Processing · Electrical Eng. & Systems 2025-01-03 Haitian Lu , Gaofeng Cheng , Liuping Luo , Leying Zhang , Yanmin Qian , Pengyuan Zhang

Although the amount of available spoken content is steadily increasing, extracting information and knowledge from speech recordings remains challenging. Beyond enhancing traditional information retrieval methods such as speech search and…

Information Retrieval · Computer Science 2025-07-08 Sirina Håland , Trond Karlsen Strøm , Petra Galuščáková

We present OnPrem$.$LLM, a Python-based toolkit for applying large language models (LLMs) to sensitive, non-public data in offline or restricted environments. The system is designed for privacy-preserving use cases and provides prebuilt…

Computation and Language · Computer Science 2025-09-30 Arun S. Maiya

Large language models (LLMs) embed extensive knowledge and utilize it to perform exceptionally well across various tasks. Nevertheless, outdated knowledge or factual errors within LLMs can lead to misleading or incorrect responses, causing…

Computation and Language · Computer Science 2024-10-21 Li Zeng , Yingyu Shan , Zeming Liu , Jiashu Yao , Yuhang Guo

We present Bloom Library, a linguistically diverse set of multimodal and multilingual datasets for language modeling, image captioning, visual storytelling, and speech synthesis/recognition. These datasets represent either the most, or…

Computation and Language · Computer Science 2022-10-27 Colin Leong , Joshua Nemecek , Jacob Mansdorfer , Anna Filighera , Abraham Owodunni , Daniel Whitenack

Large Language Models (LLMs) have demonstrated remarkable capabilities on various tasks, while the further evolvement is limited to the lack of high-quality training data. In addition, traditional training approaches rely too much on…

Computation and Language · Computer Science 2025-02-14 Peidong Wang , Ming Wang , Zhiming Ma , Xiaocui Yang , Shi Feng , Daling Wang , Yifei Zhang , Kaisong Song

We study multimodal survival analysis integrating clinical text, tabular covariates, and genomic profiles using locally deployable large language models (LLMs). As many institutions face tight computational and privacy constraints, this…

Machine Learning · Computer Science 2026-03-24 Moritz Gögl , Christopher Yau

Successfully training a deep neural network demands a huge corpus of labeled data. However, each label only provides limited information to learn from and collecting the requisite number of labels involves massive human effort. In this…

Computation and Language · Computer Science 2020-04-17 Dong-Ho Lee , Rahul Khanna , Bill Yuchen Lin , Jamin Chen , Seyeon Lee , Qinyuan Ye , Elizabeth Boschee , Leonardo Neves , Xiang Ren

Large, open datasets can accelerate ecological research, particularly by enabling researchers to develop new insights by reusing datasets from multiple sources. However, to find the most suitable datasets to combine and integrate,…

Digital Libraries · Computer Science 2025-10-07 Zehao Lu , Thijs L van der Plas , Parinaz Rashidi , W Daniel Kissling , Ioannis N Athanasiadis

Large language models (LLMs) have been increasingly deployed as local agents on personal devices with CPUs, NPUs and integrated GPUs. However, forecasting inference performance on devices with such heterogeneity remains challenging due to…

Performance · Computer Science 2025-08-05 Rajeev Patwari , Ashish Sirasao , Devleena Das

Building custom data analysis platforms traditionally requires extensive software engineering expertise, limiting accessibility for many researchers. Here, I demonstrate that modern large language models (LLMs) and autonomous coding agents…

Other Quantitative Biology · Quantitative Biology 2025-10-14 Jesse G. Meyer

A lexical database tool tailored for phonological research is described. Database fields include transcriptions, glosses and hyperlinks to speech files. Database queries are expressed using HTML forms, and these permit regular expression…

cmp-lg · Computer Science 2008-02-03 Steven Bird
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