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The Basic Local Alignment Search Tool (BLAST) is currently the most popular method for searching databases of biological sequences. BLAST compares sequences via similarity defined by a weighted edit distance, which results in it being…

Biomolecules · Quantitative Biology 2020-10-29 Amir Shanehsazzadeh , David Belanger , David Dohan

Inconsistent modifications to code clones can lead to software defects. Many approaches exist to support consistent modifications based on clone detection and/or change pattern extraction. However, no tool currently supports synchronization…

Software Engineering · Computer Science 2026-03-18 Motoki Abe , Shinpei Hayashi

Evaluating consistency in large language models (LLMs) is crucial for ensuring reliability, particularly in complex, multi-step interactions between humans and LLMs. Traditional self-consistency methods often miss subtle semantic changes in…

Artificial Intelligence · Computer Science 2025-06-18 Zhaochen Hong , Haofei Yu , Jiaxuan You

AI coding assistants increasingly generate code alongside tests. How developers structure test code, whether inline with the implementation or in separate blocks, has traditionally been a matter of testing philosophy. We investigate whether…

Software Engineering · Computer Science 2026-04-23 Éric Jacopin

As Federated Learning (FL) expands to larger and more distributed environments, consistency in training is challenged by network-induced delays, clock unsynchronicity, and variability in client updates. This combination of factors may…

Machine Learning · Computer Science 2025-06-12 Baran Can Gül , Stefanos Tziampazis , Nasser Jazdi , Michael Weyrich

We consider the task of document-level entity linking (EL), where it is important to make consistent decisions for entity mentions over the full document jointly. We aim to leverage explicit "connections" among mentions within the document…

Computation and Language · Computer Science 2022-07-05 Klim Zaporojets , Johannes Deleu , Yiwei Jiang , Thomas Demeester , Chris Develder

Certification through auditing allows to ensure that critical embedded systems are secure. This entails reviewing their critical components and checking for dangerous execution paths. This latter task requires the use of specialized tools…

Software Engineering · Computer Science 2023-03-08 Guilhem Lacombe , David Feliot , Etienne Boespflug , Marie-Laure Potet

Testing is an integral part of the software development process. Yet, writing tests is time-consuming and therefore often neglected. Classical test generation tools such as EvoSuite generate behavioral test suites by optimizing for…

Software Engineering · Computer Science 2023-10-04 Nikitha Rao , Kush Jain , Uri Alon , Claire Le Goues , Vincent J. Hellendoorn

The large body of existing research in Test Case Prioritization (TCP) techniques, can be broadly classified into two categories: dynamic techniques (that rely on run-time execution information) and static techniques (that operate directly…

Software Engineering · Computer Science 2018-01-19 Qi Luo , Kevin Moran , Denys Poshyvanyk

Automated software testing is integral to the software development process, streamlining workflows and ensuring product reliability. Visual testing, particularly for user interface (UI) and user experience (UX) validation, plays a vital…

Software Engineering · Computer Science 2025-10-08 Milad Moradi , Ke Yan , David Colwell , Rhona Asgari

In this paper, we present a challenging code reasoning task: vulnerability detection. Large Language Models (LLMs) have shown promising results in natural-language and math reasoning, but state-of-the-art (SOTA) models reported only 54.5%…

Software Engineering · Computer Science 2025-01-09 Benjamin Steenhoek , Md Mahbubur Rahman , Monoshi Kumar Roy , Mirza Sanjida Alam , Hengbo Tong , Swarna Das , Earl T. Barr , Wei Le

Fault detection is crucial for ensuring the safety and reliability of modern industrial systems. However, a significant scientific challenge is the lack of rigorous risk control and reliable uncertainty quantification in existing diagnostic…

Artificial Intelligence · Computer Science 2025-08-05 Mingchen Mei , Yi Li , YiYao Qian , Zijun Jia

Modern open source software development heavily relies on the issue tracking systems to manage their feature requests, bug reports, tasks, and other similar artifacts. Together, those "issues" form a complex network with links to each…

Software Engineering · Computer Science 2021-08-11 Alexander Nicholson , Jin L. C. Guo

Background: Symbolic models, particularly decision trees, are widely used in software engineering for explainable analytics in defect prediction, configuration tuning, and software quality assessment. Most of these models rely on…

Software Engineering · Computer Science 2026-02-19 Amirali Rayegan , Tim Menzies

Fine-tuning MLLMs for Video Temporal Grounding (VTG) often improves in-domain performance but degrades sharply under domain shift. In this work, we find that this failure is primarily driven not just by unseen query concepts, but by visual…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Geo Ahn , Jiwook Han , Youngrae Kim , Joonseok Lee , Jinwoo Choi

LLMs are increasingly explored for malware analysis; however, current LLM-based malware attribution remains limited by unsupported indicators and insufficient code-level grounding for identifying malicious and vulnerable code segments. To…

Cryptography and Security · Computer Science 2026-05-08 Christopher G. Pedraza Pohlenz , Hassan Jalil Hadi , Ali Hassan , Ali Shoker

Conformance checking techniques let us find out to what degree a process model and real execution data correspond to each other. In recent years, alignments have proven extremely useful in calculating conformance statistics. Most techniques…

Artificial Intelligence · Computer Science 2019-12-12 Mohammadreza Fani Sani , Sebastiaan J. van Zelst , Wil M. P. van der Aalst

Automated unit test generation using large language models (LLMs) holds great promise but often struggles with generating tests that are both correct and maintainable in real-world projects. This paper presents KTester, a novel framework…

Software Engineering · Computer Science 2026-02-09 Anji Li , Mingwei Liu , Zhenxi Chen , Zheng Pei , Zike Li , Dekun Dai , Yanlin Wang , Zibin Zheng

Multilingual programming, which involves using multiple programming languages (PLs) in a single project, is increasingly common due to its benefits. However, it introduces cross-language bugs (CLBs), which arise from interactions between…

Software Engineering · Computer Science 2026-04-22 Zengyang Li , Yimeng Li , Binbin Huang , Peng Liang , Ran Mo , Hui Liu , Yutao Ma

Software debugging is a very time-consuming process, which is even worse for multi-threaded programs, due to the non-deterministic behavior of thread-scheduling algorithms. However, the debugging time may be greatly reduced, if automatic…

Logic in Computer Science · Computer Science 2015-09-09 Erickson H. da S. Alves , Lucas C. Cordeiro , Eddie B. de Lima Filho