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We present RKappa, a framework for the development and analysis of rule-based models within a mature, statistically empowered R environment. The infrastructure allows model editing, modification, parameter sampling, simulation, statistical…

Molecular Networks · Quantitative Biology 2014-12-16 Anatoly Sorokin , Oksana Sorokina , J. Douglas Armstrong

Large language models (LLMs) have demonstrated significant potential in the realm of natural language understanding and programming code processing tasks. Their capacity to comprehend and generate human-like code has spurred research into…

Software Engineering · Computer Science 2024-03-07 Chongzhou Fang , Ning Miao , Shaurya Srivastav , Jialin Liu , Ruoyu Zhang , Ruijie Fang , Asmita , Ryan Tsang , Najmeh Nazari , Han Wang , Houman Homayoun

This paper describes a new modelling language for the effective design of Java annotations. Since their inclusion in the 5th edition of Java, annotations have grown from a useful tool for the addition of meta-data to play a central role in…

Programming Languages · Computer Science 2019-10-02 Irene Córdoba , Juan de Lara

Large language models (LLMs) and transformer-based architectures are increasingly utilized for source code analysis. As software systems grow in complexity, integrating LLMs into code analysis workflows becomes essential for enhancing…

Software Engineering · Computer Science 2025-03-25 Hamed Jelodar , Mohammad Meymani , Roozbeh Razavi-Far

Large Language Models (LLMs) reasoning processes are challenging to analyze due to their complexity and the lack of organized visualization tools. We present ReasonGraph, a web-based platform for visualizing and analyzing LLM reasoning…

Computation and Language · Computer Science 2025-03-07 Zongqian Li , Ehsan Shareghi , Nigel Collier

Effective evaluation of multi-hop tool use is critical for analyzing the understanding, reasoning, and function-calling capabilities of large language models (LLMs). However, progress has been hindered by a lack of reliable evaluation…

Computation and Language · Computer Science 2025-05-21 Junjie Ye , Zhengyin Du , Xuesong Yao , Weijian Lin , Yufei Xu , Zehui Chen , Zaiyuan Wang , Sining Zhu , Zhiheng Xi , Siyu Yuan , Tao Gui , Qi Zhang , Xuanjing Huang , Jiecao Chen

A Large Language Model (LLM) represents a cutting-edge artificial intelligence model that generates coherent content, including grammatically precise sentences, human-like paragraphs, and syntactically accurate code snippets. LLMs can play…

Software Engineering · Computer Science 2023-12-11 Robson Santos , Italo Santos , Cleyton Magalhaes , Ronnie de Souza Santos

Enabling large language models (LLMs) to solve complex reasoning tasks is a key step toward artificial general intelligence. Recent work augments LLMs with external tools to enable agentic reasoning, achieving high utility and efficiency in…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Qi Li , Xinchao Wang

Law at large underpins modern society, codifying and governing many aspects of citizens' daily lives. Oftentimes, law is subject to interpretation, debate and challenges throughout various courts and jurisdictions. But in some other areas,…

Programming Languages · Computer Science 2021-07-06 Denis Merigoux , Nicolas Chataing , Jonathan Protzenko

Loop vulnerabilities are one major risky construct in software development. They can easily lead to infinite loops or executions, exhaust resources, or introduce logical errors that degrade performance and compromise security. The problem…

Software Engineering · Computer Science 2026-01-23 Adeyemi Adeseye , Aisvarya Adeseye

In many safety-critical engineering domains, hazard analysis techniques are an essential part of requirement elicitation. Of the methods proposed for this task, STPA (System-Theoretic Process Analysis) represents a relatively recent…

Software Engineering · Computer Science 2025-03-18 Ali Raeisdanaei , Juho Kim , Michael Liao , Sparsh Kochhar

This paper introduces ExKLoP, a novel framework designed to evaluate how effectively Large Language Models (LLMs) integrate expert knowledge into logical reasoning systems. This capability is especially valuable in engineering, where expert…

Artificial Intelligence · Computer Science 2025-05-13 Franciszek Górski , Oskar Wysocki , Marco Valentino , Andre Freitas

As software projects progress, quality of code assumes paramount importance as it affects reliability, maintainability and security of software. For this reason, static analysis tools are used in developer workflows to flag code quality…

While automated vulnerability detection techniques have made promising progress in detecting security vulnerabilities, their scalability and applicability remain challenging. The remarkable performance of Large Language Models (LLMs), such…

Cryptography and Security · Computer Science 2024-10-24 Avishree Khare , Saikat Dutta , Ziyang Li , Alaia Solko-Breslin , Rajeev Alur , Mayur Naik

Large Language Models (LLMs) have demonstrated impressive performance in various NLP tasks, but they still suffer from challenges such as hallucination and weak numerical reasoning. To overcome these challenges, external tools can be used…

Computation and Language · Computer Science 2023-06-26 Yuchen Zhuang , Yue Yu , Kuan Wang , Haotian Sun , Chao Zhang

Automated analysis for engineering structures offers considerable potential for boosting efficiency by minimizing repetitive tasks. Although AI-driven methods are increasingly common, no systematic framework yet leverages Large Language…

Software Engineering · Computer Science 2025-04-15 Haoran Liang , Mohammad Talebi Kalaleh , Qipei Mei

In this paper we present DELTA, a deep learning based language technology platform. DELTA is an end-to-end platform designed to solve industry level natural language and speech processing problems. It integrates most popular neural network…

Prompt injection attacks exploit vulnerabilities in large language models (LLMs) to manipulate the model into unintended actions or generate malicious content. As LLM integrated applications gain wider adoption, they face growing…

Cryptography and Security · Computer Science 2024-01-03 Daniel Wankit Yip , Aysan Esmradi , Chun Fai Chan

This note introduces CutLang, a domain specific language that aims to provide a clear, human readable way to define analyses in high energy particle physics (HEP) along with an interpretation framework of that language. A proof of principle…

High Energy Physics - Phenomenology · Physics 2018-09-19 Sezen Sekmen , Gokhan Unel

This paper presents Favalon, a functional programming language built on the premise of a lambda calculus for use as an interactive shell replacement. Favalon seamlessly integrates with typed versions of existing libraries and commands using…

Programming Languages · Computer Science 2021-04-09 Kouji Matsui