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Related papers: Synthetic Hachimoji DNA Sequencing with Graphene N…

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We perform electronic structure and quantum transport studies of dangling bond loops created on H-passivated Si(100) surfaces and connected to carbon nanoribbon leads. We model loops with straight and zigzag topologies as well as with…

Mesoscale and Nanoscale Physics · Physics 2015-06-24 Andrii Kleshchonok , Rafael Gutierrez , Gianaurelio Cuniberti

In this study, structural stability, electronic, optical and vibrational properties of DNA nucleobase adsorbed Graphene Quantum Dot (GQD) has been investigated using density functional theory. Based on state-of-art electronic structure…

Mesoscale and Nanoscale Physics · Physics 2020-12-02 Manoj Kumar , Neetika Thakur , Munish Sharma

Silicene, a hexagonal buckled 2-D allotrope of silicon, shows potential as a platform for numerous new applications, and may allow for easier integration with existing silicon-based microelectronics than graphene. Here, we show that…

Mesoscale and Nanoscale Physics · Physics 2015-03-26 Rodrigo G. Amorim , Ralph H. Scheicher

We theoretically reveal the unusual features of the Josephson effect in a strained zigzag graphene nanoribbon with a small length relative to the superconducting coherence length and an arbitrary width. We find a step-wise variation of the…

Mesoscale and Nanoscale Physics · Physics 2021-02-03 Leyla Majidi , Reza Asgari

Previous theoretical studies have shown that measuring the transverse current across DNA strands while they translocate through a nanopore or channel may provide a statistically distinguishable signature of the DNA bases, and may thus allow…

Soft Condensed Matter · Physics 2009-11-21 Matt Krems , Michael Zwolak , Yuriy V. Pershin , Massimiliano Di Ventra

The measured electric resistance of carbon nanotubes wrapped with DNA molecules depends strongly on the spin of the injected electrons. Motivated by these experiments, we study the effect of helix-shaped potentials on the electronic…

Mesoscale and Nanoscale Physics · Physics 2018-11-14 Yotam Perlitz , Karen Michaeli

The quantum transport properties of a graphene kirigami similar to those studied in recent experiments are calculated in the regime of elastic, reversible deformations. Our results show that, at low electronic densities, the conductance…

Mesoscale and Nanoscale Physics · Physics 2016-06-15 D. A. Bahamon , Zenan Qi , Harold. S. Park , Vitor M. Pereira , David K. Campbell

Quartz nanopipettes are an important emerging class of electric single-molecule sensors for DNA, proteins, their complexes as well as other biomolecular targets. However, in comparison to other resistive pulse sensors, nanopipettes…

Mesoscale and Nanoscale Physics · Physics 2025-03-18 Rand A. Al-Waqfi , Cengiz Khan , Oliver J. Irving , Lauren Matthews , Tim Albrecht

Recently solid state nanopores nanogaps have generated a lot of interest in ultrafast DNA sequencing. However, there are challenges to slow down the DNA translocation process to achieve a single nucleobase resolution. A series of…

Applied Physics · Physics 2020-04-24 Rameshwar L. Kumawat , Priyanka Garg , Gargee Bhattacharyya , Biswarup Pathak

Based on tight-binding model and a generalized Green's function method in Landauer-B\"uttiker formalism, the effects of quantum interference (QI) on the noise power and Fano factor of an armchair graphene nanoribbon (aGNR) sandwiched…

Mesoscale and Nanoscale Physics · Physics 2015-01-23 A. Ahmadi Fouladi , Javad Vahedi

We report the results of our first-principles investigation on the interaction of the nucleobases adenine (A), cytosine (C), guanine (G), thymine (T), and uracil (U) with graphene, carried out within the density functional theory framework,…

Materials Science · Physics 2007-07-05 S. Gowtham , Ralph H. Scheicher , Rajeev Ahuja , Ravindra Pandey , Shashi P. Karna

Single-molecule biosensing, with a promise of being applied in protein and DNA sequencing, could be achieved using tunneling current approach. Electrode-molecule-electrode tunneling current critically depends on whether molecular levels…

We study the electron transport through a graphene nanoribbon-superconductor junction. Both zigzag and armchair edge graphene nanoribbons are considered, and the effects of the magnetic field and disorder on the transport property are…

Mesoscale and Nanoscale Physics · Physics 2015-05-13 Qing-feng Sun , X. C. Xie

We investigate the impact of strained nanobubbles on the conductance characteristics of graphene nanoribbons using a combined molecular dynamics - tight-binding simulation scheme. We describe in detail how the conductance, density of…

Mesoscale and Nanoscale Physics · Physics 2015-09-30 D. A. Bahamon , Zenan Qi , Harold S. Park , Vitor M. Pereira , David K. Campbell

Carrying out first-principles calculations, we study N-doped capped carbon nanotube (CNT) electrodes applied to DNA sequencing. While we obtain for the face-on nucleobase junction configurations a conventional conductance ordering where the…

Mesoscale and Nanoscale Physics · Physics 2014-07-10 Han Seul Kim , Seung Jin Lee , Yong-Hoon Kim

Fast, reliable and inexpensive DNA sequencing is an important pursuit in healthcare, especially in personalized medicine with possible deep societal impacts. Despite significant progress of various nanopore-based sequencing configurations,…

DNA nanotechnology uses predictable interactions of nucleic acids to precisely engineer complex nanostructures. Characterizing these self-assembled structures at the single-structure level is crucial for validating their design and…

Biological Physics · Physics 2025-10-21 Wangwei Dong , Zezhou Liu , Ruiyao Liu , Deborah Kuchnir Fygenson , Walter Reisner

Translocation of DNA through a nanopore with embedded electrodes is at the centre of new rapid inexpensive sequencing methods which allow distinguishing the four nucleobases by their different electronic structure. However, the subnanometer…

Mesoscale and Nanoscale Physics · Physics 2012-06-20 Yuhui He , Makusu Tsutsui , Ralph H. Scheicher , Masateru Taniguchi , Tomoji Kawai

We report a theoretical low-field magnetotransport study unveiling the effect of pseudospin in realistic models of weakly disordered graphene-based materials. Using an efficient Kubo computational method, and simulating the effect of…

Mesoscale and Nanoscale Physics · Physics 2016-03-11 Frank Ortmann , Alessandro Cresti , Gilles Montambaux , Stephan Roche

We study theoretically the feasibility of using transverse electronic transport within a nanopore for rapid DNA sequencing. Specifically, we examine the effects of the environment and detection probes on the distinguishability of the DNA…

Soft Condensed Matter · Physics 2009-11-13 Johan Lagerqvist , Michael Zwolak , Massimiliano Di Ventra