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We introduce NetworKit, an open-source software package for analyzing the structure of large complex networks. Appropriate algorithmic solutions are required to handle increasingly common large graph data sets containing up to billions of…
I describe our team's development of the SpeX Prism Library Analysis Toolkit (SPLAT), a combined spectral data repository for over 2500 low-resolution spectra of very low mass dwarfs (late M, L and T dwarfs), and Python-based analysis…
We present a grism extraction package (LINEAR) designed to reconstruct one-dimensional spectra from a collection of slitless spectroscopic images, ideally taken at a variety of orientations, dispersion directions, and/or dither positions.…
Hyperspectral pansharpening consists of fusing a high-resolution panchromatic band and a low-resolution hyperspectral image to obtain a new image with high resolution in both the spatial and spectral domains. These remote sensing products…
Recently, many software tools have been developed to perform quantification in LC-MS analyses. However, most of them are specific to either a quantification strategy (e.g. label-free or isotopic labelling) or a mass-spectrometry system…
SPectra Analysis and Retrievable Catalog Lab (SPARCL) at NOIRLab's Astro Data Lab was created to efficiently serve large optical and infrared spectroscopic datasets. It consists of services, tools, example workflows and currently contains…
Despite data's crucial role in machine learning, most existing tools and research tend to focus on systems on top of existing data rather than how to interpret and manipulate data. In this paper, we propose DataLab, a unified data-oriented…
The analysis of experimental results with Python often requires writing many code scripts which all need access to the same set of functions. In a common field of research, this set will be nearly the same for many users. The qspec Python…
Specutils is an Astropy affiliated package which provides a consistent interface to astronomical spectra (primarily 1D). As Specutils can be adapted to parse spectra in many different formats, Specutils plays a key role at Data Central,…
Data visualization is essential for developing an understanding of a complex system. The power grid is one of the most complex systems in the world and effective power grid research visualization software must 1) be easy to use, 2) support…
Different types of spectroscopies, such as X-ray absorption near edge structure (XANES) and Raman spectroscopy, play a very important role in analyzing the characteristics of different materials. In scientific literature, XANES/Raman data…
The aim of this paper is to present and describe SimLab 1.1 (Simulation Laboratory for Uncertainty and Sensitivity Analysis) software designed for Monte Carlo analysis that is based on performing multiple model evaluations with…
Orchestrating parametric fitting of multicomponent spectra at scale is an essential yet underappreciated task in high-throughput quantification of materials and chemical composition. To automate the annotation process for spectroscopic and…
Image-based experiments can yield many thousands of individual measurements describing each object of interest, such as cells in microscopy screens. CellProfiler Analyst is a free, open-source software package designed for the exploration…
X-ray spectroscopy is a powerful technique for the analysis of the energy distribution of X-rays from astrophysical sources. It allows for the study of the properties, composition, and physical processes taking place at the site of…
A numerical framework is developed to solve various types of PDEs on complicated domains, including steady and time-dependent, non-linear and non-local PDEs, with different boundary conditions that can also include non-linear and non-local…
The field of gamma-ray astronomy has seen important progress during the last decade, yet there exists so far no common software framework for the scientific analysis of gamma-ray telescope data. We propose to fill this gap by means of the…
iSpec is an integrated spectroscopic software framework suitable for the creation of spectral libraries such as the Benchmark Stars library and the determination of atmospheric parameters (i.e. effective temperature, surface gravity,…
The spectrogram is a classical DSP tool used to view signals in both time and frequency. Unfortunately, the Heisenberg Uncertainty Principal limits our ability to use them for detecting and measuring narrowband signal modulation in wideband…
Atom probe tomography (APT) has matured to a versatile nanoanalytical characterization tool with applications that range from materials science to geology and possibly beyond. Already, well over 100 APT microscopes exist worldwide.…