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The interacting lattice gas model is used to simulate fluid flow through an open percolating porous medium with the fluid entering at the source-end and leaving from the opposite end. The shape of the steady-state concentration profile and…

Statistical Mechanics · Physics 2009-11-07 R. B. Pandey , J. F. Gettrust , D. Stauffer

In living cells, molecular motors create activity that enhances the diffusion of particles throughout the cytoplasm, and not just ones attached to the motors. We demonstrate initial steps toward creating artificial cells that mimic this…

Soft Condensed Matter · Physics 2019-05-01 Viva R. Horowitz , Zachary C. Chambers , İrep Gözen , Thomas G. Dimiduk , Vinothan N. Manoharan

Recent studies of the phase diagram for spherical, purely repulsive, active particles established the existence of a transition from a liquid-like to a solid-like phase analogous to the one observed in colloidal systems at thermal…

Statistical Mechanics · Physics 2020-04-30 Lorenzo Caprini , Claudio Maggi , Umberto Marini Bettolo Marconi , Matteo Paoluzzi , Andrea Puglisi

We consider a fluid of $d$-dimensional spherical particles interacting via a pair potential $\phi(r)$ which takes a finite value $\epsilon$ if the two spheres are overlapped ($r<\sigma$) and 0 otherwise. This penetrable-sphere model has…

Statistical Mechanics · Physics 2015-06-29 L. Acedo , A. Santos

We use numerical simulations to study the phase behavior of a system of purely repulsive soft dumbbells as a function of size ratio of the two components and their relative degree of deformability. We find a plethora of different phases…

Soft Condensed Matter · Physics 2011-06-16 Andela Šarić , Behnaz Bozorgui , Angelo Cacciuto

Topological phases of matter are defined by their nontrivial patterns of ground-state quantum entanglement, which is irremovable so long as the excitation gap and the protecting symmetries, if any, are maintained. Recent studies on…

Strongly Correlated Electrons · Physics 2019-03-25 Dominic V. Else , Hoi Chun Po , Haruki Watanabe

We study the motility-induced phase separation of active particles driven through the interconversion of two chemical species controlled by ideal reservoirs (chemiostats). As a consequence, the propulsion speed is non-constant and depends…

Statistical Mechanics · Physics 2019-09-04 Andreas Fischer , Arkya Chatterjee , Thomas Speck

Space-filling assemblies of athermal hydrophobic particles floating at an air-water interface, called particle rafts, are shown to undergo an unusual phase transition between two i.e., a low density `less-rigid and a high density…

Disordered Systems and Neural Networks · Physics 2015-06-11 Atul Varshney , A. Sane , Shankar Ghosh , S. Bhattacharya

Monte Carlo computer simulations of a quasi two dimensional (2D) dipolar fluid at low and intermediate densities indicate that the structure of the fluid is well described by an ideal mixture of self-assembling clusters. A detailed analysis…

Soft Condensed Matter · Physics 2007-05-23 J. M. Tavares , J. J. Weis , M. M. Telo da Gama

Molecular dynamics simulations of interacting soft disks confined in a heterogeneous quenched matrix of soft obstacles show dynamics which is fundamentally different from that of hard disks. The interactions between the disks can enhance…

Soft Condensed Matter · Physics 2018-02-21 Simon Kaspar Schnyder , Jürgen Horbach

A simple three-dimensional model of a fluid whose constituent particles interact via a short range attractive and long range repulsive potential is used to model the aggregation into large spherical-like clusters made up of hundreds of…

Soft Condensed Matter · Physics 2025-02-11 Antonio Díaz-Pozuelo , Diego González-Salgado , Enrique Lomba

We simulated irreversible aggregation of non-interacting particles and of particles interacting via repulsive and attractive potentials explicitly implementing the rotational diffusion of aggregating clusters. Our study confirms that the…

Soft Condensed Matter · Physics 2019-03-26 Swetlana Jungblut , Jan-Ole Joswig , Alexander Eychmüller

The colonisation of a soft passive material by motile cells such as bacteria is common in biology. The resulting colonies of the invading cells are often observed to exhibit intricate patterns whose morphology and dynamics can depend on a…

Soft Condensed Matter · Physics 2021-01-12 Mohammad Imaran , Mandar Inamdar , Ranganathan Prabhakar , Raghunath Chelakkot

Active fluid droplets are a class of soft materials exhibiting autonomous motion sustained by an energy supply. Such systems have been shown to capture motility regimes typical of biological cells and are ideal candidates as building-block…

Soft Condensed Matter · Physics 2023-03-01 A. Tiribocchi , M. Durve , M. Lauricella , A. Montessori , D. Marenduzzo , S. Succi

We introduce a novel model for active particles with short-range aligning interactions and study their behaviour in crowded environments using numerical simulations. When only active particles are present, we observe a transition from a…

Computational Physics · Physics 2017-12-06 Simon Nilsson , Giovanni Volpe

Liquid-liquid phase separation has recently emerged as an important topic in the context of cellular organization. Within this context, there are multiple poorly understood features; for instance hints of critical behavior in the plasma…

Statistical Mechanics · Physics 2024-06-25 Felix Herrmann , Burkhard Dünweg , Martin Girard

Dense soft glasses show strong collective caging behavior at sufficiently low temperatures. Using molecular dynamics simulations of a model glass former, we show that the incorporation of activity or self-propulsion, f0, can induce cage…

Soft Condensed Matter · Physics 2016-08-01 Rituparno Mandal , Pranab Jyoti Bhuyan , Madan Rao , Chandan Dasgupta

We study the phase diagram of a system of spherical particles interacting in three dimensions through a potential consisting of a strict hard core plus a linear repulsive shoulder at larger distances. The phase diagram (obtained…

Statistical Mechanics · Physics 2009-10-31 E. A. Jagla

We theoretically study mixtures of chemically-interacting particles, which produce or consume a chemical to which they are attracted or repelled, in the most general case of many coexisting species. We find a new class of active phase…

Soft Condensed Matter · Physics 2019-07-15 Jaime Agudo-Canalejo , Ramin Golestanian

A new model that describes adsorption and clustering of particles on a surface is introduced. A {\it clustering} transition is found which separates between a phase of weakly correlated particle distributions and a phase of strongly…

Statistical Mechanics · Physics 2009-10-31 Ofer Biham , Ofer Malcai , Daniel A. Lidar , David Avnir