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Boolean networks model finite discrete dynamical systems with complex behaviours. The state of each component is determined by a Boolean function of the state of (a subset of) the components of the network. This paper addresses the…

Artificial Intelligence · Computer Science 2020-02-28 Stéphanie Chevalier , Christine Froidevaux , Loïc Paulevé , Andrei Zinovyev

It has been known since the 60's that any complete discrete $n$-state automaton admits a reset word of length not exceeding $\alpha n^3+o(n^3)$ for some absolute constant $\alpha$. J.-E. Pin and P. Frankl proved this statement with…

Combinatorics · Mathematics 2019-01-23 Yaroslav Shitov

We follow language theoretic approach to synchronizing automata and \v{C}ern\'{y}'s conjecture initiated in a series of recent papers. We find a precise lower bound for the reset complexity of a principal ideal languages. Also we show a…

Formal Languages and Automata Theory · Computer Science 2014-12-23 Marina Maslennikova , Emanuele Rodaro

Deterministic automata have been traditionally studied through the point of view of language equivalence, but another perspective is given by the canonical notion of shortest-distinguishing-word distance quantifying the of states.…

Logic in Computer Science · Computer Science 2024-04-23 Wojciech Różowski

State-of-the-art neural algorithmic reasoners make use of message passing in graph neural networks (GNNs). But typical GNNs blur the distinction between the definition and invocation of the message function, forcing a node to send messages…

Machine Learning · Computer Science 2024-01-15 Andrew Dudzik , Tamara von Glehn , Razvan Pascanu , Petar Veličković

An automata network is a finite graph where each node holds a state from some finite alphabet and is equipped with an update function that changes its state according to the configuration of neighboring states. More concisely, it is given…

Computational Complexity · Computer Science 2020-04-28 Florian Bridoux , Maximilien Gadouleau , Guillaume Theyssier

This paper gives new results for synchronization strings, a powerful combinatorial object that allows to efficiently deal with insertions and deletions in various communication settings: $\bullet$ We give a deterministic, linear time…

Information Theory · Computer Science 2017-11-13 Bernhard Haeupler , Amirbehshad Shahrasbi

Boolean networks have been widely used in many areas of science and engineering to represent various dynamical behaviour. In systems biology, they became useful tools to study the dynamical characteristics of large-scale biomolecular…

Dynamical Systems · Mathematics 2024-01-01 Jongrae Kim , Woojeong Lee , Kwang-Hyun Cho

Small world networks interpolate between fully regular and fully random topologies and simultaneously exhibit large local clustering as well as short average path length. Small world topology has therefore been suggested to support network…

Disordered Systems and Neural Networks · Physics 2015-05-19 Carsten Grabow , Steven Hill , Stefan Grosskinsky , Marc Timme

We study the synchronization of chaotic units connected through time-delayed fluctuating interactions. We focus on small-world networks of Bernoulli and Logistic units with a fixed chiral backbone. Comparing the synchronization properties…

The quotient complexity of a regular language L is the number of left quotients of L, which is the same as the state complexity of L. Suppose that L and L' are binary regular languages with quotient complexities m and n, and that the…

Formal Languages and Automata Theory · Computer Science 2013-10-08 Jason Bell , Janusz Brzozowski , Nelma Moreira , Rogério Reis

Boolean networks (BNs) are discrete-time systems where nodes are inter-connected (here we call such connection rule among nodes as network structure), and the dynamics of each gene node is determined by logical functions. In this paper, we…

Systems and Control · Electrical Eng. & Systems 2020-11-03 Jie Zhong , Daniel W. C. Ho , Jianquan Lu

An Automata Network is a map ${f:Q^n\rightarrow Q^n}$ where $Q$ is a finite alphabet. It can be viewed as a network of $n$ entities, each holding a state from $Q$, and evolving according to a deterministic synchronous update rule in such a…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-02-22 Florian Bridoux , Maximilien Gadouleau , Guillaume Theyssier

We present a general approach to the study of synchrony in networks of weakly nonlinear systems described by singularly perturbed equations of the type $x''+x+\epsilon f(x,x')=0$. By performing a perturbative calculation based on normal…

Pattern Formation and Solitons · Physics 2016-08-16 Krešimir Josić , Slaven Peleš

We present different classes of solutions to the Firing Squad Synchronization Problem on networks of different shapes. The nodes are finite state processors that work at unison discrete steps. The networks considered are the line, the ring…

Data Structures and Algorithms · Computer Science 2007-05-23 J. Gruska , S. La Torre , M. Napoli , M. Parente

Boolean networks can be viewed as functions on the set of binary strings of a given length, described via logical rules. They were introduced as dynamic models into biology, in particular as logical models of intracellular regulatory…

Dynamical Systems · Mathematics 2025-04-16 J. García Galofre , M. Pérez Millán , A. Galarza Rial , R. Laubenbacher , A. Dickenstein

It is known that there are no more Lyndon words of length n than there are periodic necklaces of same length. This paper considers a similar problem where, additionally, the necklaces must be without some forbidden factors. This problem…

Discrete Mathematics · Computer Science 2016-05-06 Mathilde Noual

We exhibit a recurrence on the number of discrete line segments joining two integer points in the plane using an encoding of such segments as balanced words of given length and height over the two-letter alphabet $\{0,1\}$. We give…

Combinatorics · Mathematics 2010-07-30 Nicolas Bedaride , Eric Domenjoud , Damien Jamet , Jean-Luc Remy

The problem addressed in this paper is the analysis of a distributed consensus algorithm for arbitrary networks, proposed by B\'en\'ezit et al.. In the initial setting, each node in the network has one of two possible states ("yes" or…

Performance · Computer Science 2013-05-21 Shang Shang , Paul W. Cuff , Sanjeev R. Kulkarni , Pan Hui

This paper is concerned with the reduction of a noisy synchronous Boolean network to a coarse-grained Markov chain with number of states being equal to the number of attractors of the original network.

Biological Physics · Physics 2009-12-21 F. Fourré , D. Baurain