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Recent computational advances enable protein design pipelines to run end-to-end on GPUs, yet their heterogeneous computational behaviors remain undercharacterized at the system level. We implement and profile a representative pipeline at…

Emerging Technologies · Computer Science 2026-01-13 Jinwoo Hwang , Yeongmin Hwang , Tadiwos Meaza , Hyeonbin Bae , Jongse Park

Compiling high-level programs to target high-speed packet-processing pipelines is a challenging combinatorial optimization problem. The compiler must configure the pipeline's resources to match the high-level semantics of the program, while…

Networking and Internet Architecture · Computer Science 2022-11-22 Xiangyu Gao , Divya Raghunathan , Ruijie Fang , Tao Wang , Xiaotong Zhu , Anirudh Sivaraman , Srinivas Narayana , Aarti Gupta

Both IP lookup and packet classification in IP routers can be implemented by some form of tree traversal. SRAM-based Pipelining can improve the throughput dramatically. However, previous pipelining schemes result in unbalanced memory…

Networking and Internet Architecture · Computer Science 2011-07-28 Weirong Jiang , Hoang Le , Viktor K. Prasanna

Scientific computing is at the core of many High-Performance Computing applications, including computational flow dynamics. Because of the uttermost importance to simulate increasingly larger computational models, hardware acceleration is…

Hardware Architecture · Computer Science 2022-01-13 Tom Hogervorst , Tong Dong Qiu , Giacomo Marchiori , Alf Birger , Markus Blatt , Razvan Nane

We propose a new hybrid topology optimization algorithm based on multigrid approach that combines the parallelization strategy of CPU using OpenMP and heavily multithreading capabilities of modern Graphics Processing Units (GPU). In…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-01 Arya Prakash Padhi , Souvik Chakraborty , Anupam Chakrabarti , Rajib Chowdhury

Pipeline parallelism (PP) when training neural networks enables larger models to be partitioned spatially, leading to both lower network communication and overall higher hardware utilization. Unfortunately, to preserve the statistical…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-11 Bowen Yang , Jian Zhang , Jonathan Li , Christopher Ré , Christopher R. Aberger , Christopher De Sa

The Bulk Synchronous Parallel(BSP) computational model has emerged as the dominant distributed framework to build large-scale iterative graph processing systems. While its implementations(e.g., Pregel, Giraph, and Hama) achieve high…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-23 Qun Chen , Song Bai , Zhanhuai Li , Zhiying Gou , Bo Suo , Wei Pan

We propose a scalable and cost-efficient framework for deploying Graph-based Retrieval-Augmented Generation (GraphRAG) in enterprise environments. While GraphRAG has shown promise for multi- hop reasoning and structured retrieval, its…

Artificial Intelligence · Computer Science 2025-12-19 Congmin Min , Sahil Bansal , Joyce Pan , Abbas Keshavarzi , Rhea Mathew , Amar Viswanathan Kannan

Productivity issues such as lengthy compilation and limited code reuse have restricted usage of field-programmable gate arrays (FPGAs), despite significant technical advantages. Recent work into overlays -- virtual coarse-grained…

Hardware Architecture · Computer Science 2017-05-09 David Wilson , Greg Stitt

Vision Transformer (ViT) acceleration with field programmable gate array (FPGA) is promising but challenging. Existing FPGA-based ViT accelerators mainly rely on temporal architectures, which process different operators by reusing the same…

Hardware Architecture · Computer Science 2024-08-02 Qingyu Guo , Jiayong Wan , Songqiang Xu , Meng Li , Yuan Wang

By providing highly efficient one-sided communication with globally shared memory space, Partitioned Global Address Space (PGAS) has become one of the most promising parallel computing models in high-performance computing (HPC). Meanwhile,…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-07-12 Yashael Faith Arthanto , David Ojika , Joo-Young Kim

Because of the recent trends in Deep Neural Networks (DNN) models being memory-bound, inter-operator pipelining for DNN accelerators is emerging as a promising optimization. Inter-operator pipelining reduces costly on-chip global memory and…

Hardware Architecture · Computer Science 2024-05-06 Raveesh Garg , Hyoukjun Kwon , Eric Qin , Yu-Hsin Chen , Tushar Krishna , Liangzhen Lai

Large-scale language models have become increasingly challenging and expensive to train. Among various methods addressing this issue, Pipeline Parallelism has been widely employed to accommodate massive model weights within limited GPU…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-31 Ziming Liu , Shenggan Cheng , Haotian Zhou , Yang You

The field of connectomics faces unprecedented "big data" challenges. To reconstruct neuronal connectivity, automated pixel-level segmentation is required for petabytes of streaming electron microscopy data. Existing algorithms provide…

It is a challenging task to train large DNN models on sophisticated GPU platforms with diversified interconnect capabilities. Recently, pipelined training has been proposed as an effective approach for improving device utilization. However,…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-03 Shiqing Fan , Yi Rong , Chen Meng , Zongyan Cao , Siyu Wang , Zhen Zheng , Chuan Wu , Guoping Long , Jun Yang , Lixue Xia , Lansong Diao , Xiaoyong Liu , Wei Lin

Partitioning graphs into blocks of roughly equal size such that few edges run between blocks is a frequently needed operation when processing graphs on a parallel computer. When a topology of a distributed system is known an important task…

Data Structures and Algorithms · Computer Science 2020-01-23 Marcelo Fonseca Faraj , Alexander van der Grinten , Henning Meyerhenke , Jesper Larsson Träff , Christian Schulz

High-performance implementations of graph algorithms are challenging to implement on new parallel hardware such as GPUs because of three challenges: (1) the difficulty of coming up with graph building blocks, (2) load imbalance on parallel…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-16 Carl Yang , Aydin Buluc , John D. Owens

As inference workloads for large language models (LLMs) scale to meet growing user demand, pipeline parallelism (PP) has become a widely adopted strategy for multi-GPU deployment, particularly in cross-node setups, to improve key-value (KV)…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-30 Yongchao He , Bohan Zhao , Zheng Cao

Graph Partitioning is widely used in many real-world applications such as fraud detection and social network analysis, in order to enable the distributed graph computing on large graphs. However, existing works fail to balance the…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-07 Li Zeng , Haohan Huang , Binfan Zheng , Kang Yang , Shengcheng Shao , Jinhua Zhou , Jun Xie , Rongqian Zhao , Xin Chen

Efficient and real time segmentation of color images has a variety of importance in many fields of computer vision such as image compression, medical imaging, mapping and autonomous navigation. Being one of the most computationally…

Computer Vision and Pattern Recognition · Computer Science 2017-10-09 Roopal Nahar , Akanksha Baranwal , K. Madhava Krishna
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