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Molecular dynamics (MD) simulations allow atomistic insights into chemical and biological processes. Accurate MD simulations require computationally demanding quantum-mechanical calculations, being practically limited to short timescales…

In this paper we introduce a new symbolic type neural tree network called symbolic function network (SFN) that is based on using elementary functions to model systems in a symbolic form. The proposed formulation permits feature selection,…

Neural and Evolutionary Computing · Computer Science 2008-08-12 George S. Eskander , Amir F. Atiya

The integration of machine learning (ML) models enhances the efficiency, affordability, and reliability of feature detection in microscopy, yet their development and applicability are hindered by the dependency on scarce and often flawed…

Computer Vision and Pattern Recognition · Computer Science 2025-09-04 Matthew J. Lynch , Ryan Jacobs , Gabriella Bruno , Priyam Patki , Dane Morgan , Kevin G. Field

To advance continuous-valued token modeling and temporal-coherence enforcement, we propose FELLE, an autoregressive model that integrates language modeling with token-wise flow matching. By leveraging the autoregressive nature of language…

Computation and Language · Computer Science 2025-09-04 Hui Wang , Shujie Liu , Lingwei Meng , Jinyu Li , Yifan Yang , Shiwan Zhao , Haiyang Sun , Yanqing Liu , Haoqin Sun , Jiaming Zhou , Yan Lu , Yong Qin

Deep matrix factorizations (deep MFs) are recent unsupervised data mining techniques inspired by constrained low-rank approximations. They aim to extract complex hierarchies of features within high-dimensional datasets. Most of the loss…

Machine Learning · Computer Science 2023-01-26 Pierre De Handschutter , Nicolas Gillis

Embedding models have demonstrated strong performance in tasks like clustering, retrieval, and feature extraction while offering computational advantages over generative models and cross-encoders. Benchmarks such as MTEB have shown that…

Software Engineering · Computer Science 2025-08-28 Zhuohao Li , Wenqing Chen , Jianxing Yu , Zhichao Lu

While mechanistic interpretability tools like Sparse Autoencoders (SAEs) can uncover meaningful features within Large Language Models (LLMs), a critical gap remains in transforming these insights into practical actions for model…

Artificial Intelligence · Computer Science 2026-04-29 Ling Shi , Xinwei Wu , Xiaohu Zhao , Hao Wang , Heng Liu , Yangyang Liu , Linlong Xu , Longyue Wang , Deyi Xiong , Weihua Luo

Machine Learning (ML) is used for developing wall functions for Improved Delayed Detached Eddy Simulations (IDDES). The ML model is based on KDtree which essentially is a fast look-up table. It searches the nearest target datapoint(s) for…

Fluid Dynamics · Physics 2025-03-04 Lars Davidson

Dynamic feature selection (DFS) is a machine learning framework in which features are acquired sequentially for individual samples under budget constraints. The exponential growth in the number of possible feature acquisition paths forces a…

Machine Learning · Computer Science 2026-05-13 Javier Fumanal-Idocin , Raquel Fernandez-Peralta , Javier Andreu-Perez

The discovery of symbolic solutions -- mathematical expressions, logical rules, and algorithmic structures -- is fundamental to advancing scientific and engineering progress. However, traditional methods often struggle with search…

Artificial Intelligence · Computer Science 2025-11-17 Ping Guo , Qingfu Zhang , Xi Lin

Optimization of discrete structures aims at generating a new structure with the better property given an existing one, which is a fundamental problem in machine learning. Different from the continuous optimization, the realistic…

Machine Learning · Computer Science 2021-10-05 Xianggen Liu , Pengyong Li , Fandong Meng , Hao Zhou , Huasong Zhong , Jie Zhou , Lili Mou , Sen Song

Although large-scale visual foundation models (VFMs) achieve remarkable performance in semantic understanding, they still underperform in instance-aware dense prediction tasks. They exhibit different biases in representation: for instance,…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Yachan Guo , JoseLuis Gomez Zurita , Danna Xue , Yi Xiao , AntonioManuel Lopez Pena

Deep learning-based surface electromyography (sEMG) gesture recognition is frequently bottlenecked by data scarcity and limited subject diversity. While synthetic data generation via Generative Adversarial Networks (GANs) and diffusion…

Human-Computer Interaction · Computer Science 2026-04-16 Boxuan Jiang , Chenyun Dai , Can Han

New products must be formulated rapidly to succeed in the global formulated product market; however, key product indicators (KPIs) can be complex, poorly understood functions of the chemical composition and processing history. Consequently,…

Machine Learning · Computer Science 2024-05-09 Alexander W. Rogers , Amanda Lane , Cesar Mendoza , Simon Watson , Adam Kowalski , Philip Martin , Dongda Zhang

We propose SymDiff, a method for constructing equivariant diffusion models using the framework of stochastic symmetrisation. SymDiff resembles a learned data augmentation that is deployed at sampling time, and is lightweight,…

Machine Learning · Computer Science 2025-03-04 Leo Zhang , Kianoosh Ashouritaklimi , Yee Whye Teh , Rob Cornish

Symbolic regression, a task discovering the formula best fitting the given data, is typically based on the heuristical search. These methods usually update candidate formulas to obtain new ones with lower prediction errors iteratively.…

Machine Learning · Computer Science 2025-09-11 Zihan Yu , Jingtao Ding , Yong Li , Depeng Jin

A force field is a critical component in molecular dynamics simulations for computational drug discovery. It must achieve high accuracy within the constraints of molecular mechanics' (MM) limited functional forms, which offers high…

Machine Learning · Computer Science 2024-10-10 Tianze Zheng , Ailun Wang , Xu Han , Yu Xia , Xingyuan Xu , Jiawei Zhan , Yu Liu , Yang Chen , Zhi Wang , Xiaojie Wu , Sheng Gong , Wen Yan

High-quality saliency maps are essential in several machine learning application areas including explainable AI and weakly supervised object detection and segmentation. Many techniques have been developed to generate better saliency using…

Computer Vision and Pattern Recognition · Computer Science 2022-07-06 Osman Tursun , Simon Denman , Sridha Sridharan , Clinton Fookes

We introduce Group SELFIES, a molecular string representation that leverages group tokens to represent functional groups or entire substructures while maintaining chemical robustness guarantees. Molecular string representations, such as…

Machine Learning · Computer Science 2023-10-19 Austin Cheng , Andy Cai , Santiago Miret , Gustavo Malkomes , Mariano Phielipp , Alán Aspuru-Guzik

Recent advancements in computational chemistry have leveraged the power of trans-former-based language models, such as MoLFormer, pre-trained using a vast amount of simplified molecular-input line-entry system (SMILES) sequences, to…

Biomolecules · Quantitative Biology 2024-11-05 Tianhao Peng , Yuchen Li , Xuhong Li , Jiang Bian , Zeke Xie , Ning Sui , Shahid Mumtaz , Yanwu Xu , Linghe Kong , Haoyi Xiong