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Sequence alignment has had an enormous impact on our understanding of biology, evolution, and disease. The alignment of biological {\em networks} holds similar promise. Biological networks generally model interactions between biomolecules…

Molecular Networks · Quantitative Biology 2019-11-25 Wayne B. Hayes

Over the past ten years, many different approaches have been proposed for different aspects of the problem of resources management for long running, dynamic and diverse workloads such as processing query streams or distributed deep…

Performance · Computer Science 2023-08-24 Nader Alfares , George Kesidis , Ata Fatahi Baarzi , Aman Jain

This article describes a novel approach to chance-constrained programming based on the sample average approximation (SAA) method. Recent work focuses on heuristic approximations to the SAA problem and we introduce a novel approach which…

Optimization and Control · Mathematics 2023-07-25 Rick Jeuken , Michael Forbes

Surprise Adequacy (SA) is one of the emerging and most promising adequacy criteria for Deep Learning (DL) testing. As an adequacy criterion, it has been used to assess the strength of DL test suites. In addition, it has also been used to…

Machine Learning · Computer Science 2021-03-11 Michael Weiss , Rwiddhi Chakraborty , Paolo Tonella

When there are infinitely many scenarios, the current studies of two-stage stochastic programming problems rely on the relatively complete recourse assumption. However, such assumption can be unrealistic for many real-world problems. This…

Optimization and Control · Mathematics 2020-08-03 Rui Peng Liu

Modern aircraft are designed with redundant control effectors to cater for fault tolerance and maneuverability requirements. This leads to aircraft being over-actuated and requires control allocation schemes to distribute the control…

Systems and Control · Electrical Eng. & Systems 2024-03-28 Hafiz Zeeshan Iqbal Khan , Surrayya Mobeen , Jahanzeb Rajput , Jamshed Riaz

Using a specially constructed set of hard 2-SAT problems with four satisfying assignments, we study the scaling and sampling performance of numerical simulation of quantum annealing as well as that of the physical quantum annealers offered…

Quantum Physics · Physics 2025-11-04 Vrinda Mehta , Hans De Raedt , Kristel Michielsen , Fengping Jin

We propose dynamic sampled stochastic approximation (SA) methods for stochastic optimization with a heavy-tailed distribution (with finite 2nd moment). The objective is the sum of a smooth convex function with a convex regularizer.…

Optimization and Control · Mathematics 2017-05-26 Alejandro Jofré , Philip Thompson

Multi-scenario recommendation is dedicated to retrieve relevant items for users in multiple scenarios, which is ubiquitous in industrial recommendation systems. These scenarios enjoy portions of overlaps in users and items, while the…

Information Retrieval · Computer Science 2022-08-25 Yuanliang Zhang , Xiaofeng Wang , Jinxin Hu , Ke Gao , Chenyi Lei , Fei Fang

In the machine learning and optimization community, there are two main approaches for the convex risk minimization problem, namely, the Stochastic Approximation (SA) and the Sample Average Approximation (SAA). In terms of oracle complexity…

Optimization and Control · Mathematics 2021-10-26 Darina Dvinskikh

The stochastic Auxiliary Problem Principle (APP) algorithm is a general Stochastic Approximation (SA) scheme that turns the resolution of an original optimization problem into the iterative resolution of a sequence of auxiliary problems.…

Optimization and Control · Mathematics 2022-05-23 Thomas Bittar , Pierre Carpentier , Jean-Philippe Chancelier , Jérôme Lonchampt

This paper presents a local energy distribution based hyperparameter determination for stochastic simulated annealing (SSA). SSA is capable of solving combinatorial optimization problems faster than typical simulated annealing (SA), but…

Machine Learning · Computer Science 2023-11-02 Naoya Onizawa , Kyo Kuroki , Duckgyu Shin , Takahiro Hanyu

We introduce NeuroSA, a neuromorphic architecture specifically designed to ensure asymptotic convergence to the ground state of an Ising problem using a Fowler-Nordheim quantum mechanical tunneling based threshold-annealing process. The…

Quantum annealing (QA) has been proposed as a quantum enhanced optimization heuristic exploiting tunneling. Here, we demonstrate how finite range tunneling can provide considerable computational advantage. For a crafted problem designed to…

A wide variety of problems in machine learning, including exemplar clustering, document summarization, and sensor placement, can be cast as constrained submodular maximization problems. Unfortunately, the resulting submodular optimization…

Machine Learning · Computer Science 2015-04-23 Rafael da Ponte Barbosa , Alina Ene , Huy L. Nguyen , Justin Ward

This paper investigates the stability and convergence properties of asynchronous stochastic approximation (SA) algorithms, with a focus on extensions relevant to average-reward reinforcement learning. We first extend a stability proof…

Machine Learning · Computer Science 2025-12-10 Huizhen Yu , Yi Wan , Richard S. Sutton

Recent work has shown how information theory extends conventional full-rationality game theory to allow bounded rational agents. The associated mathematical framework can be used to solve constrained optimization problems. This is done by…

Neural and Evolutionary Computing · Computer Science 2008-11-07 William Macready , David Wolpert

Background and objective: Stacking is an ensemble machine learning method that averages predictions from multiple other algorithms, such as generalized linear models and regression trees. An implementation of stacking, called super…

Machine Learning · Statistics 2019-08-01 Alexander P. Keil , Daniel Westreich , Jessie K Edwards , Stephen R Cole

Numerical simulations of models and theories that describe complex systems such as spin glasses are becoming increasingly important. Beyond fundamental research, these computational methods also find practical applications in fields like…

Population annealing is a variant of the simulated annealing algorithm that improves the quality of the thermalization process in systems with rough free-energy landscapes by introducing a resampling process. We consider the diluted…

Statistical Mechanics · Physics 2025-08-26 Fernando Martínez-García , Diego Porras