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Integration and analysis of multi-omics data provide valuable insights for improving cancer subtype classification. However, such data are inherently heterogeneous, high-dimensional, and exhibit complex intra- and inter-modality…

Quantitative Methods · Quantitative Biology 2026-02-13 Tiantian Yang , Zhiqian Chen

Muilti-modality data are ubiquitous in biology, especially that we have entered the multi-omics era, when we can measure the same biological object (cell) from different aspects (omics) to provide a more comprehensive insight into the…

Genomics · Quantitative Biology 2021-12-15 Xuesong Wang , Zhihang Hu , Tingyang Yu , Ruijie Wang , Yumeng Wei , Juan Shu , Jianzhu Ma , Yu Li

Sentiment analysis and emotion recognition in videos are challenging tasks, given the diversity and complexity of the information conveyed in different modalities. Developing a highly competent framework that effectively addresses the…

Computer Vision and Pattern Recognition · Computer Science 2024-10-18 Prasad Chaudhari , Aman Kumar , Chandravardhan Singh Raghaw , Mohammad Zia Ur Rehman , Nagendra Kumar

Graph neural networks (GNNs) have shown significant success in learning graph representations. However, recent studies reveal that GNNs often fail to outperform simple MLPs on heterophilous graph tasks, where connected nodes may differ in…

Machine Learning · Computer Science 2025-04-10 Songwei Zhao , Yuan Jiang , Zijing Zhang , Yang Yu , Hechang Chen

A large number of real-world graphs or networks are inherently heterogeneous, involving a diversity of node types and relation types. Heterogeneous graph embedding is to embed rich structural and semantic information of a heterogeneous…

Social and Information Networks · Computer Science 2020-04-01 Xinyu Fu , Jiani Zhang , Ziqiao Meng , Irwin King

Graph representation learning has been widely studied and demonstrated effectiveness in various graph tasks. Most existing works embed graph data in the Euclidean space, while recent works extend the embedding models to hyperbolic or…

Machine Learning · Computer Science 2023-04-04 Cheng Deng , Fan Xu , Jiaxing Ding , Luoyi Fu , Weinan Zhang , Xinbing Wang

Multi-graph learning is crucial for extracting meaningful signals from collections of heterogeneous graphs. However, effectively integrating information across graphs with differing topologies, scales, and semantics, often in the absence of…

Machine Learning · Computer Science 2026-02-02 Zahra Moslemi , Ziyi Liang , Norbert Fortin , Babak Shahbaba

Multimodal data plays a critical role in web-based recommendation systems, where information from diverse modalities such as vision and text enhances representation learning. However, real-world multimodal datasets often suffer from…

Information Retrieval · Computer Science 2026-05-04 Yuan Li , Jun Hu , Jiaxin Jiang , Bryan Hooi , Bingsheng He

Cancer has relational information residing at varying scales, modalities, and resolutions of the acquired data, such as radiology, pathology, genomics, proteomics, and clinical records. Integrating diverse data types can improve the…

Machine Learning · Computer Science 2024-07-29 Asim Waqas , Aakash Tripathi , Ravi P. Ramachandran , Paul Stewart , Ghulam Rasool

Graph Neural Networks (GNNs) have achieved state-of-the-art results in node classification tasks. However, most improvements are in multi-class classification, with less focus on the cases where each node could have multiple labels. The…

Machine Learning · Computer Science 2024-06-19 Tianqi Zhao , Ngan Thi Dong , Alan Hanjalic , Megha Khosla

Multimodal knowledge graph completion (MKGC) aims to predict missing entities in MKGs. Previous works usually share relation representation across modalities. This results in mutual interference between modalities during training, since for…

Computation and Language · Computer Science 2022-11-02 Yu Zhao , Xiangrui Cai , Yike Wu , Haiwei Zhang , Ying Zhang , Guoqing Zhao , Ning Jiang

With the rapid development of online multimedia services, especially in e-commerce platforms, there is a pressing need for personalised recommendation systems that can effectively encode the diverse multi-modal content associated with each…

Artificial Intelligence · Computer Science 2024-07-30 Zixuan Yi , Iadh Ounis

Data-driven learning of physical systems has kindled significant attention, where many neural models have been developed. In particular, mesh-based graph neural networks (GNNs) have demonstrated significant potential in modeling…

Machine Learning · Computer Science 2025-10-08 Yuan Mi , Qi Wang , Xueqin Hu , Yike Guo , Ji-Rong Wen , Yang Liu , Hao Sun

Graph neural networks are increasingly applied to multimodal medical diagnosis for their inherent relational modeling capabilities. However, their efficacy is often compromised by the prevailing reliance on a single, static graph built from…

Computer Vision and Pattern Recognition · Computer Science 2025-12-24 Ziwei Qin , Xuhui Song , Deqing Huang , Na Qin , Jun Li

Multi-modal entity alignment aims to identify equivalent entities between two multi-modal Knowledge graphs by integrating multi-modal data, such as images and text, to enrich the semantic representations of entities. However, existing…

Artificial Intelligence · Computer Science 2026-01-21 Zhifei Li , Ziyue Qin , Xiangyu Luo , Xiaoju Hou , Yue Zhao , Miao Zhang , Zhifang Huang , Kui Xiao , Bing Yang

Prompt learning has demonstrated impressive efficacy in the fine-tuning of multimodal large models to a wide range of downstream tasks. Nonetheless, applying existing prompt learning methods for the diagnosis of neurological disorder still…

Computer Vision and Pattern Recognition · Computer Science 2024-06-28 Liang Peng , Songyue Cai , Zongqian Wu , Huifang Shang , Xiaofeng Zhu , Xiaoxiao Li

Classifying research output into context-specific label taxonomies is a challenging and relevant downstream task, given the volume of existing and newly published articles. We propose a method to enhance the performance of article…

Machine Learning · Computer Science 2024-05-29 Khang Ly , Yury Kashnitsky , Savvas Chamezopoulos , Valeria Krzhizhanovskaya

Integrating Pre-trained Language Models (PLMs) with Graph Neural Networks (GNNs) remains a central challenge in text-rich heterophilic graph learning. We propose a novel integration framework that enables effective fusion between powerful…

Computation and Language · Computer Science 2025-10-09 Aarush Sinha

Combining different modalities of data from human tissues has been critical in advancing biomedical research and personalised medical care. In this study, we leverage a graph embedding model (i.e VGAE) to perform link prediction on…

Genomics · Quantitative Biology 2021-07-27 Amine Amor , Pietro Lio' , Vikash Singh , Ramon Viñas Torné , Helena Andres Terre

Graph neural networks (GNNs) are powerful machine learning models designed to handle irregularly structured data. However, their generic design often proves inadequate for analyzing brain connectomes in Alzheimer's Disease (AD),…

Machine Learning · Computer Science 2024-12-10 Zhepeng Wang , Runxue Bao , Yawen Wu , Guodong Liu , Lei Yang , Liang Zhan , Feng Zheng , Weiwen Jiang , Yanfu Zhang
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