English
Related papers

Related papers: Interactive Visualization of Protein RINs using Ne…

200 papers

As machine learning becomes more pervasive, there is an urgent need for interpretable explanations of predictive models. Prior work has developed effective methods for visualizing global model behavior, as well as generating local…

Machine Learning · Computer Science 2019-04-02 Matthew Britton

Summary: Ancestral recombination graphs (ARGs) are a complete representation of the genetic relationships between recombining lineages and are of central importance in population genetics. Recent breakthroughs in simulation and inference…

Populations and Evolution · Quantitative Biology 2025-08-07 James Kitchens , Yan Wong

The need to visualize large social networks is growing as hardware capabilities make analyzing large networks feasible and many new data sets become available. Unfortunately, the visualizations in existing systems do not satisfactorily…

Human-Computer Interaction · Computer Science 2020-08-04 Nathalie Henry , Jean-Daniel Fekete , Michael Mcguffin

An efficient structural identifiability analysis algorithm is developed in this study for a broad range of network structures. The proposed method adopts the Wright's path coefficient method to generate identifiability equations in forms of…

Molecular Networks · Quantitative Biology 2017-08-25 Yulin Wang , Na Lu , Hongyu Miao

Point cloud analysis without pose priors is very challenging in real applications, as the orientations of point clouds are often unknown. In this paper, we propose a brand new point-set learning framework PRIN, namely, Point-wise Rotation…

Computer Vision and Pattern Recognition · Computer Science 2021-11-23 Yang You , Yujing Lou , Ruoxi Shi , Qi Liu , Yu-Wing Tai , Lizhuang Ma , Weiming Wang , Cewu Lu

Network theorists have developed methods to characterize the complex interactions in natural phenomena. The structure of the network of interactions between proteins is important in the field of proteomics, and has been subject to intensive…

Molecular Networks · Quantitative Biology 2016-09-07 Allan A. Zea , Antonio Rueda-Toicen

We present vivid, an R package for visualizing variable importance and variable interactions in machine learning models. The package provides a range of displays including heatmap and graph-based displays for viewing variable importance and…

Computation · Statistics 2024-10-15 Alan Inglis , Andrew Parnell , Catherine Hurley

In a Wireless Sensor Network (WSN), data manipulation and representation is a crucial part and can take a lot of time to be developed from scratch. Although various visualization tools have been created for certain projects so far, these…

Networking and Internet Architecture · Computer Science 2017-03-09 Anh-Vu Dinh-Duc , The-Hien Dang-Ha , Ngoc-An Lam

Interconnection networks, or `interconnects,' play a crucial role in administering the communication among computing units of high-performance computing (HPC) systems. Efficient provisioning of interconnects minimizes the processing delay…

Systems and Control · Electrical Eng. & Systems 2024-09-23 Hong Ki Kim , Yong Hun Jang , Hee Soo Kim , Won Young Kang , Young-Chai Ko , Sang Hyun Lee

IVISIT is a generic interactive visual simulation tool that is based on Python/Numpy and can be used for system simulation, parameter optimization, parameter management, and visualization of system dynamics as required, for example,for…

Human-Computer Interaction · Computer Science 2024-08-13 Andreas Knoblauch

The ever-growing datasets in observational astronomy have challenged scientists in many aspects, including an efficient and interactive data exploration and visualization. Many tools have been developed to confront this challenge. However,…

Instrumentation and Methods for Astrophysics · Physics 2017-08-09 W. Yu , M. Carrasco Kind , R. J. Brunner

Segmenting unseen object instances in cluttered environments is an important capability that robots need when functioning in unstructured environments. While previous methods have exhibited promising results, they still tend to provide…

Computer Vision and Pattern Recognition · Computer Science 2021-07-01 Christopher Xie , Arsalan Mousavian , Yu Xiang , Dieter Fox

Digital Twins (DTs) systems are virtual representations of physical assets allowing organizations to gain insights and improve existing processes. In practice, DTs require proper modeling, coherent development and seamless deployment along…

Networking and Internet Architecture · Computer Science 2025-02-10 Alexandre Gustavo Wermann , Juliano Araujo Wickboldt

The Roofline Model and its derivatives provide an intuitive representation of the best achievable performance on a given architecture. The Roofline Toolkit project is a collaboration among researchers at Argonne National Laboratory,…

Performance · Computer Science 2015-01-27 Wyatt Spear , Boyana Norris

Methods: We have developed a software suite (DataSet Tracker) for real-time analysis designed to run on computers, smartphones, and smart glasses hardware and suitable for resource-constrained, on-the-fly computing in microscopes without…

Quantitative Methods · Quantitative Biology 2025-08-13 Alexandre Matov

Most current neural networks for reconstructing surfaces from point clouds ignore sensor poses and only operate on raw point locations. Sensor visibility, however, holds meaningful information regarding space occupancy and surface…

Computer Vision and Pattern Recognition · Computer Science 2022-02-07 Raphael Sulzer , Loic Landrieu , Alexandre Boulch , Renaud Marlet , Bruno Vallet

We present SAInT, a Python-based tool for visually exploring and understanding the behavior of Machine Learning (ML) models through integrated local and global sensitivity analysis. Our system supports Human-in-the-Loop (HITL) workflows by…

Machine Learning · Computer Science 2025-08-07 Manuela Schuler

The sheer amounts of biological data that are generated in recent years have driven the development of network analysis tools to facilitate the interpretation and representation of these data. A fundamental challenge in this domain is the…

Quantitative Methods · Quantitative Biology 2013-07-31 Arnon Mazza , Irit Gat-Viks , Hesso Farhan , Roded Sharan

Multivariate graphs are prolific across many fields, including transportation and neuroscience. A key task in graph analysis is the exploration of connectivity, to, for example, analyze how signals flow through neurons, or to explore how…

Representation learning using network embedding has received tremendous attention due to its efficacy to solve downstream tasks. Popular embedding methods (such as deepwalk, node2vec, LINE) are based on a neural architecture, thus unable to…

Social and Information Networks · Computer Science 2021-09-23 Debajyoti Bera , Rameshwar Pratap , Bhisham Dev Verma , Biswadeep Sen , Tanmoy Chakraborty