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A numerical framework based on network partition and operator splitting is developed to solve nonlinear differential equations of large-scale dynamic processes encountered in physics, chemistry and biology. Under the assumption that those…

Computational Physics · Physics 2018-01-22 Shucheng Pan , Jianhang Wang , Xiangyu Hu , Nikolaus A. Adams

Runko is a new open-source plasma simulation framework implemented in C++ and Python. It is designed to function as an easy-to-extend general toolbox for simulating astrophysical plasmas with different theoretical and numerical models.…

Computational Physics · Physics 2022-08-10 J. Nättilä

Partial differential equations (PDEs) play a crucial role in studying a vast number of problems in science and engineering. Numerically solving nonlinear and/or high-dimensional PDEs is often a challenging task. Inspired by the traditional…

Numerical Analysis · Mathematics 2022-01-11 Yihao Hu , Tong Zhao , Shixin Xu , Zhiliang Xu , Lizhen Lin

In this article, we introduce a three-precision formulation of the General Alternating-Direction Implicit method (GADI) designed to accelerate the solution of large-scale sparse linear systems $Ax=b$. GADI is a framework that can represent…

Numerical Analysis · Mathematics 2026-01-01 Jifeng Ge , Bastien Vieublé , Juan Zhang

Deep learning has achieved remarkable success in diverse applications; however, its use in solving partial differential equations (PDEs) has emerged only recently. Here, we present an overview of physics-informed neural networks (PINNs),…

Machine Learning · Computer Science 2021-11-03 Lu Lu , Xuhui Meng , Zhiping Mao , George E. Karniadakis

We present the IAMReX, an adaptive and parallel solver for particle-resolved simulations on the multi-level grid. The fluid equations are solved using a finite-volume scheme on the block-structured semi-staggered grids with both subcycling…

Fluid Dynamics · Physics 2024-08-27 Xuzhu Li , Chun Li , Xiaokai Li , Wenzhuo Li , Mingze Tang , Yadong Zeng , Zhengping Zhu

Solutions of partial differential equations (PDEs) on manifolds have provided important applications in different fields in science and engineering. Existing methods are majorly based on discretization of manifolds as implicit functions,…

Numerical Analysis · Mathematics 2017-08-03 Rongjie Lai , Jia Li

Python is rapidly becoming the lingua franca of machine learning and scientific computing. With the broad use of frameworks such as Numpy, SciPy, and TensorFlow, scientific computing and machine learning are seeing a productivity boost on…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-01 Zane Fink , Simeng Liu , Jaemin Choi , Matthias Diener , Laxmikant V. Kale

We announce some Python classes for numerical solution of partial differential equations, or boundary value problems of ordinary differential equations. These classes are built on routines in \texttt{numpy} and \texttt{scipy.sparse.linalg}…

Computational Physics · Physics 2015-03-17 Asif Mushtaq , Trond Kvamsdal , Kåre Olaussen

PySPH is an open-source, Python-based, framework for particle methods in general and Smoothed Particle Hydrodynamics (SPH) in particular. PySPH allows a user to define a complete SPH simulation using pure Python. High-performance code is…

The study deals with the parallelization of 2D and 3D finite element based Navier-Stokes codes using direct solvers. Development of sparse direct solvers using multifrontal solvers has significantly reduced the computational time of direct…

Mathematical Software · Computer Science 2009-10-13 Mandhapati P. Raju

The material point method (MPM) is a hybrid particle-grid method widely used for simulating large deformation with history-dependent behavior. Standard MPM often relies on a dense background grid, which can be highly inefficient when…

Computational Engineering, Finance, and Science · Computer Science 2026-05-28 Yidong Zhao , Lars Blatny , Xiang Feng , Mikkel M. Juel , Chenfanfu Jiang , Johan Gaume

Maps from a source manifold $ {\mathcal M}$ to a target manifold ${\mathcal N}$ appear in liquid crystals, colour image enhancement, texture mapping, brain mapping, and many other areas. A numerical framework to solve variational problems…

Numerical Analysis · Mathematics 2017-10-27 Nathan D. King , Steven J. Ruuth

We present an adaptive methodology for the solution of (linear and) non-linear time dependent problems that is especially tailored for massively parallel computations. The basic concept is to solve for large blocks of space-time unknowns…

Computational Physics · Physics 2016-08-30 Robert Dyja , Baskar Ganapathysubramanian , Kristoffer G. van der Zee

In this paper, we present PARTIME, a software library written in Python and based on PyTorch, designed specifically to speed up neural networks whenever data is continuously streamed over time, for both learning and inference. Existing…

Machine Learning · Computer Science 2022-12-05 Enrico Meloni , Lapo Faggi , Simone Marullo , Alessandro Betti , Matteo Tiezzi , Marco Gori , Stefano Melacci

This paper presents our work on designing a parallel platform for large-scale reservoir simulations. Detailed components, such as grid and linear solver, and data structures are introduced, which can serve as a guide to parallel reservoir…

Computational Engineering, Finance, and Science · Computer Science 2018-09-05 Hui Liu , Kun Wang , Bo Yang , Zhangxin Chen

In many scientific fields, the generation and evolution of data are governed by partial differential equations (PDEs) which are typically informed by established physical laws at the macroscopic level to describe general and predictable…

Methodology · Statistics 2025-07-01 Ziyuan Chen , Shunxing Yan , Fang Yao

The Message Passing Interface (MPI) is widely used in parallel, high-performance programming, yet writing bug-free software that uses MPI remains difficult. We introduce DafnyMPI, a novel, scalable approach to formally verifying MPI…

Programming Languages · Computer Science 2025-12-23 Aleksandr Fedchin , Antero Mejr , Hari Sundar , Jeffrey S. Foster

We introduce Devito, a new domain-specific language for implementing high-performance finite difference partial differential equation solvers. The motivating application is exploration seismology where methods such as Full-Waveform…

There has been an arising trend of adopting deep learning methods to study partial differential equations (PDEs). In this paper, we introduce a deep recurrent framework for solving time-dependent PDEs without generating large scale data…

Numerical Analysis · Mathematics 2021-04-21 Cheng Chang , Liu Liu , Tieyong Zeng
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