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This article grew out of the theoretical part of my Master's thesis at the Faculty of Mathematics and Information Science at Ruprecht-Karls-Universit\"at Heidelberg under the supervision of PD Dr. Andreas Ott. Following the work of G.…

Algebraic Topology · Mathematics 2022-07-08 Maximilian Neumann

We show that recent results on randomized dimension reduction schemes that exploit structural properties of data can be applied in the context of persistent homology. In the spirit of compressed sensing, the dimension reduction is…

Computational Geometry · Computer Science 2019-09-09 Martin Lotz

In this paper, we introduce the persistence transformation, a novel methodology in Topological Data Analysis (TDA) for applications in time series data which can be obtained in various areas such as science, politics, economy, healthcare,…

Algebraic Topology · Mathematics 2024-01-31 Gideon Klaila , Anastasios Stefanou , Lena Ranke

A recent result on size functions is extended to higher homology modules: the persistent homology based on a multidimensional measuring function is reduced to a 1-dimensional one. This leads to a stable distance for multidimensional…

Algebraic Topology · Mathematics 2008-07-28 F. Cagliari , B. Di Fabio , M. Ferri

Modeling data as being sampled from a union of independent subspaces has been widely applied to a number of real world applications. However, dimensionality reduction approaches that theoretically preserve this independence assumption have…

Machine Learning · Computer Science 2016-04-08 Devansh Arpit , Ifeoma Nwogu , Venu Govindaraju

Dimensionality reduction is an integral part of data visualization. It is a process that obtains a structure preserving low-dimensional representation of the high-dimensional data. Two common criteria can be used to achieve a dimensionality…

Computational Geometry · Computer Science 2018-06-25 Lin Yan , Yaodong Zhao , Paul Rosen , Carlos Scheidegger , Bei Wang

An important theme in modern inverse problems is the reconstruction of time-dependent data from only finitely many measurements. To obtain satisfactory reconstruction results in this setting it is essential to strongly exploit temporal…

Numerical Analysis · Mathematics 2024-03-14 Martin Holler , Alexander Schlüter , Benedikt Wirth

The monitoring and management of high-volume feature-rich traffic in large networks offers significant challenges in storage, transmission and computational costs. The predominant approach to reducing these costs is based on performing a…

Machine Learning · Computer Science 2016-06-16 Tingshan Huang , Harish Sethu , Nagarajan Kandasamy

Persistent homology is a popular computational tool for analyzing the topology of point clouds, such as the presence of loops or voids. However, many real-world datasets with low intrinsic dimensionality reside in an ambient space of much…

Machine Learning · Computer Science 2024-11-01 Sebastian Damrich , Philipp Berens , Dmitry Kobak

In topological data analysis, we want to discern topological and geometric structure of data, and to understand whether or not certain features of data are significant as opposed to simply random noise. While progress has been made on…

Computational Geometry · Computer Science 2020-01-10 So Mang Han , Taylor Okonek , Nikesh Yadav , Xiaojun Zheng

Even the best scientific equipment can only partially observe reality. Recorded data is often lower-dimensional, e.g., two-dimensional pictures of the three-dimensional world. Combining data from multiple experiments then results in a…

Data Analysis, Statistics and Probability · Physics 2023-05-26 Michael Plainer , Felix Dietrich , Ioannis G. Kevrekidis

Dimensionality reduction has become an important research topic as demand for interpreting high-dimensional datasets has been increasing rapidly in recent years. There have been many dimensionality reduction methods with good performance in…

Machine Learning · Computer Science 2022-12-01 Qiaodan Luo , Leonardo Christino , Fernando V Paulovich , Evangelos Milios

Dimensionality reduction techniques map values from a high dimensional space to one with a lower dimension. The result is a space which requires less physical memory and has a faster distance calculation. These techniques are widely used…

Information Retrieval · Computer Science 2024-02-14 Richard Connor , Lucia Vadicamo

Persistent homology has emerged as a popular technique for the topological simplification of big data, including biomolecular data. Multidimensional persistence bears considerable promise to bridge the gap between geometry and topology.…

Biomolecules · Quantitative Biology 2014-12-25 Kelin Xia , Guo-Wei Wei

Topological Data Analysis methods can be useful for classification and clustering tasks in many different fields as they can provide two dimensional persistence diagrams that summarize important information about the shape of potentially…

Quantum Physics · Physics 2024-09-02 Bernardo Ameneyro , Rebekah Herrman , George Siopsis , Vasileios Maroulas

In this work, we present concepts for the analysis of the evolution of two-dimensional skeletons. By introducing novel persistence concepts, we are able to reduce typical temporal incoherence, and provide insight in skeleton dynamics. We…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

Experimental life sciences like biology or chemistry have seen in the recent decades an explosion of the data available from experiments. Laboratory instruments become more and more complex and report hundreds or thousands measurements for…

Machine Learning · Statistics 2014-03-13 C. O. S. Sorzano , J. Vargas , A. Pascual Montano

A new dimension reduction (DR) method for data sets is proposed by autonomous deforming of data manifolds. The deformation is guided by the proposed deforming vector field, which is defined by two kinds of virtual interactions between data…

Machine Learning · Computer Science 2021-10-22 Xiaodong Zhuang

Motivated by the problem of dealing with incomplete or imprecise acquisition of data in computer vision and computer graphics, we extend results concerning the stability of persistent homology with respect to function perturbations to…

Algebraic Topology · Mathematics 2010-05-11 Patrizio Frosini , Claudia Landi

Dimensionality reduction techniques are widely used for visualizing high-dimensional data in two dimensions. Existing methods are typically designed to preserve either local (e.g., $t$-SNE, UMAP) or global (e.g., MDS, PCA) structure of the…

Machine Learning · Computer Science 2026-02-02 Noël Kury , Dmitry Kobak , Sebastian Damrich
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