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Replica exchange (REX) is one of the most widely used enhanced sampling methodologies, yet its efficiency is limited by the requirement for a large number of intermediate temperature replicas. Here we present Generative Replica Exchange…

Biomolecules · Quantitative Biology 2026-03-20 Shengjie Huang , Sijie Yang , Jianqiao Yi , Rui Zheng , Haocong Liao , Muzammal Hussain , Yaoquan Tu , Xiaoyun Lu , Yang Zhou

Recent years have seen rapid development in Information Extraction, as well as its subtask, Relation Extraction. Relation Extraction is able to detect semantic relations between entities in sentences. Currently, many efficient approaches…

Computation and Language · Computer Science 2024-03-19 Zhuang Li

Extracting relational triples from unstructured text is crucial for large-scale knowledge graph construction. However, few existing works excel in solving the overlapping triple problem where multiple relational triples in the same sentence…

Computation and Language · Computer Science 2020-06-23 Zhepei Wei , Jianlin Su , Yue Wang , Yuan Tian , Yi Chang

Generative machine reading comprehension (MRC) requires a model to generate well-formed answers. For this type of MRC, answer generation method is crucial to the model performance. However, generative models, which are supposed to be the…

Computation and Language · Computer Science 2020-12-29 Junjie Yang , Zhuosheng Zhang , Hai Zhao

This paper describes an efficient algorithm REx for generating symbolic rules from artificial neural network (ANN). Classification rules are sought in many areas from automatic knowledge acquisition to data mining and ANN rule extraction.…

Neural and Evolutionary Computing · Computer Science 2010-09-28 S. M. Kamruzzaman

Named Entity Recognition and Relation Extraction are two crucial and challenging subtasks in the field of Information Extraction. Despite the successes achieved by the traditional approaches, fundamental research questions remain open.…

Computation and Language · Computer Science 2024-05-15 Yao Wang , Xin Liu , Weikun Kong , Hai-Tao Yu , Teeradaj Racharak , Kyoung-Sook Kim , Minh Le Nguyen

Document Understanding is an evolving field in Natural Language Processing (NLP). In particular, visual and spatial features are essential in addition to the raw text itself and hence, several multimodal models were developed in the field…

Computation and Language · Computer Science 2024-04-18 Wiam Adnan , Joel Tang , Yassine Bel Khayat Zouggari , Seif Edinne Laatiri , Laurent Lam , Fabien Caspani

Document-level Relation Extraction (RE) is a more challenging task than sentence RE as it often requires reasoning over multiple sentences. Yet, human annotators usually use a small number of sentences to identify the relationship between a…

Computation and Language · Computer Science 2021-06-04 Quzhe Huang , Shengqi Zhu , Yansong Feng , Yuan Ye , Yuxuan Lai , Dongyan Zhao

This paper presents our participation in the AGAC Track from the 2019 BioNLP Open Shared Tasks. We provide a solution for Task 3, which aims to extract "gene - function change - disease" triples, where "gene" and "disease" are mentions of…

Computation and Language · Computer Science 2019-09-30 Ashok Thillaisundaram , Theodosia Togia

Relation Extraction (RE) is a vital step to complete Knowledge Graph (KG) by extracting entity relations from texts.However, it usually suffers from the long-tail issue. The training data mainly concentrates on a few types of relations,…

Computation and Language · Computer Science 2020-11-30 Yixin Cao , Jun Kuang , Ming Gao , Aoying Zhou , Yonggang Wen , Tat-Seng Chua

This paper addresses a crucial challenge in retrieval-augmented generation-based relation extractors; the end-to-end training is not applicable to conventional retrieval-augmented generation due to the non-differentiable nature of instance…

Computation and Language · Computer Science 2024-10-11 Kohei Makino , Makoto Miwa , Yutaka Sasaki

Recently, a human evaluation study of Referring Expression Generation (REG) models had an unexpected conclusion: on \textsc{webnlg}, Referring Expressions (REs) generated by the state-of-the-art neural models were not only indistinguishable…

Computation and Language · Computer Science 2024-02-13 Guanyi Chen , Fahime Same , Kees van Deemter

Relation Extraction (RE) is a fundamental task in Natural Language Processing, and its document-level variant poses significant challenges, due to complex interactions between entities across sentences. While supervised models have achieved…

Computation and Language · Computer Science 2025-10-08 Robin Armingaud , Romaric Besançon

State-of-the-art models for relation extraction (RE) in the biomedical domain consider finetuning BioBERT using classification, but they may suffer from the anisotropy problem. Contrastive learning methods can reduce this anisotropy…

Computation and Language · Computer Science 2024-11-01 Farshad Noravesh

The scarcity of annotated datasets for clinical information extraction in non-English languages hinders the evaluation of large language model (LLM)-based methods developed primarily in English. In this study, we present the first…

Computation and Language · Computer Science 2026-01-15 Aidana Aidynkyzy , Oğuz Dikenelli , Oylum Alatlı , Şebnem Bora

In this paper, we propose a new paradigm for the task of entity-relation extraction. We cast the task as a multi-turn question answering problem, i.e., the extraction of entities and relations is transformed to the task of identifying…

Computation and Language · Computer Science 2019-09-05 Xiaoya Li , Fan Yin , Zijun Sun , Xiayu Li , Arianna Yuan , Duo Chai , Mingxin Zhou , Jiwei Li

Sentence-level relation extraction mainly aims to classify the relation between two entities in a sentence. The sentence-level relation extraction corpus often contains data that are difficult for the model to infer or noise data. In this…

Computation and Language · Computer Science 2021-08-05 Seongsik Park , Harksoo Kim

Definition Extraction (DE) is one of the well-known topics in Information Extraction that aims to identify terms and their corresponding definitions in unstructured texts. This task can be formalized either as a sentence classification task…

Computation and Language · Computer Science 2020-05-01 Amir Pouran Ben Veyseh , Franck Dernoncourt , Dejing Dou , Thien Huu Nguyen

In document-level relation extraction, entities may appear multiple times in a document, and their relationships can shift from one context to another. Accurate prediction of the relationship between two entities across an entire document…

Computation and Language · Computer Science 2025-08-01 Nilesh , Atul Gupta , Avinash C Panday

Multi-hop QA requires the machine to answer complex questions through finding multiple clues and reasoning, and provide explanatory evidence to demonstrate the machine reasoning process. We propose Relation Extractor-Reader and Comparator…

Computation and Language · Computer Science 2021-10-27 Ruiliu Fu , Han Wang , Xuejun Zhang , Jun Zhou , Yonghong Yan
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