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Simulation of non-adiabatic dynamics of a quantum system coupled to dissipative environments poses significant challenges. New sophisticated methods are regularly being developed with an eye towards moving to larger systems and more…

Quantum Physics · Physics 2023-06-07 Amartya Bose

SpiDy.jl solves the non-Markovian stochastic dynamics of interacting classical spin vectors and harmonic oscillator networks in contact with a dissipative environment. The methods implemented allow the user to include arbitrary memory…

Computational Physics · Physics 2024-05-31 Stefano Scali , Simon Horsley , Janet Anders , Federico Cerisola

NetworkDynamics.jl is an easy-to-use and computationally efficient package for working with heterogeneous dynamical systems on complex networks, written in Julia, a high-level, high-performance, dynamic programming language. By combining…

Mathematical Software · Computer Science 2021-07-02 Michael Lindner , Lucas Lincoln , Fenja Drauschke , Julia Monika Koulen , Hans Würfel , Anton Plietzsch , Frank Hellmann

Nonadiabatic molecular dynamics simulations aim to describe the coupled electron-nuclear dynamics of molecules in excited electronic states. These simulations have been applied to understand a plethora of photochemical and photophysical…

We present QuantumToolbox$.$jl, an open-source Julia package for simulating open quantum systems. Designed with a syntax familiar to users of QuTiP (Quantum Toolbox in Python), it harnesses Julia's high-performance ecosystem to deliver fast…

Quantum Physics · Physics 2025-10-06 Alberto Mercurio , Yi-Te Huang , Li-Xun Cai , Yueh-Nan Chen , Vincenzo Savona , Franco Nori

Analog Quantum Computers are promising tools for improving performance on applications such as modeling behavior of quantum materials, providing fast heuristic solutions to optimization problems, and simulating quantum systems. Due to the…

Quantum Physics · Physics 2024-07-31 Zachary Morrell , Marc Vuffray , Sidhant Misra , Carleton Coffrin

HarmonicBalance.jl is a publicly available Julia package designed to simplify and solve systems of periodic time-dependent nonlinear ordinary differential equations. Time dependence of the system parameters is treated with the harmonic…

Mesoscale and Nanoscale Physics · Physics 2022-05-18 Jan Košata , Javier del Pino , Toni L. Heugel , Oded Zilberberg

PowerDynamics.jl is a Julia package for time-domain modeling of power grids that is specifically designed for the stability analysis of systems with high shares of renewable energies. It makes use of Julia's state-of-the-art differential…

Systems and Control · Electrical Eng. & Systems 2021-12-15 Anton Plietzsch , Raphael Kogler , Sabine Auer , Julia Merino , Asier Gil-de-Muro , Jan Liße , Christina Vogel , Frank Hellmann

Combustion kinetic modeling is an integral part of combustion simulation, and extensive studies have been devoted to developing both high fidelity and computationally affordable models. Despite these efforts, modeling combustion kinetics is…

PowerDynamics.jl is an Open-Source library for dynamic power grid modeling built in the latest scientific programming language, Julia. It provides all the tools necessary to analyze the dynamical stability of power grids with high share of…

Systems and Control · Electrical Eng. & Systems 2020-12-10 Tim Kittel , Sabine Auer , Christina Horn

The theoretical investigation of non-adiabatic processes is hampered by the complexity of the coupled electron-nuclear dynamics beyond the Born-Oppenheimer approximation. Classically, the simulation of such reactions is limited by the…

Quantum Physics · Physics 2021-01-06 Pauline J. Ollitrault , Guglielmo Mazzola , Ivano Tavernelli

Gaussian processes are a class of flexible nonparametric Bayesian tools that are widely used across the sciences, and in industry, to model complex data sources. Key to applying Gaussian process models is the availability of well-developed…

Computation · Statistics 2019-07-02 Jamie Fairbrother , Christopher Nemeth , Maxime Rischard , Johanni Brea , Thomas Pinder

We present QUBO.jl, an end-to-end Julia package for working with QUBO (Quadratic Unconstrained Binary Optimization) instances. This tool aims to convert a broad range of JuMP problems for straightforward application in many physics and…

Optimization and Control · Mathematics 2023-09-04 Pedro Maciel Xavier , Pedro Ripper , Tiago Andrade , Joaquim Dias Garcia , Nelson Maculan , David E. Bernal Neira

The combined quantum electron-nuclear dynamics is often associated with the Born-Huang expansion of the molecular wave function and the appearance of nonadiabatic effects as a perturbation. On the other hand, native multicomponent…

Mixed-quantum-classical molecular dynamics simulation implies an effective measurement on the electronic states owing to continuously tracking the atomic forces.Based on this insight, we propose a quantum trajectory mean-field approach for…

Chemical Physics · Physics 2014-08-08 Wei Feng , Luting Xu , Xin-Qi Li , Weihai Fang , YiJing Yan

FlowClass.jl is a Julia package for classifying continuous-time dynamical systems into a hierarchy of structural classes: Gradient, Gradient-like, Morse-Smale, Structurally Stable, and General. Given a vector field…

Dynamical Systems · Mathematics 2025-12-16 Michael P. H. Stumpf

We introduce ACEpotentials.jl, a Julia-language software package that constructs interatomic potentials from quantum mechanical reference data using the Atomic Cluster Expansion (Drautz, 2019). As the latter provides a complete description…

Non-adiabatic molecular dynamics (NAMD) simulations have become an indispensable tool for investigating excited-state dynamics in solids. In this work, we propose a general framework, N$^2$AMD which employs an E(3)-equivariant deep neural…

Predicting the degradation processes of molecules over long timescales is a key aspect of industrial materials design. However, it is made computationally challenging by the need to construct large networks of chemical reactions that are…

Chemical Physics · Physics 2025-05-02 Joe Gilkes , Mark Storr , Reinhard J. Maurer , Scott Habershon

MomentClosure.jl is a Julia package providing automated derivation of the time-evolution equations of the moments of molecule numbers for virtually any chemical reaction network using a wide range of moment closure approximations. It…

Molecular Networks · Quantitative Biology 2021-05-13 Augustinas Sukys , Ramon Grima
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