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Graph representations of programs are commonly a central element of machine learning for code research. We introduce an open source Python library python_graphs that applies static analysis to construct graph representations of Python…

Machine Learning · Computer Science 2022-08-17 David Bieber , Kensen Shi , Petros Maniatis , Charles Sutton , Vincent Hellendoorn , Daniel Johnson , Daniel Tarlow

Numerical stability is a crucial requirement of reliable scientific computing. However, despite the pervasiveness of Python in data science, analyzing large Python programs remains challenging due to the lack of scalable numerical analysis…

Mathematical Software · Computer Science 2024-10-28 Yohan Chatelain , Nigel Yong , Gregory Kiar , Tristan Glatard

Stan is a popular probabilistic programming language with a self-contained syntax and semantics that is close to graphical models. Unfortunately, existing embeddings of Stan in Python use multi-line strings. That approach forces users to…

Programming Languages · Computer Science 2018-12-12 Guillaume Baudart , Martin Hirzel , Kiran Kate , Louis Mandel , Avraham Shinnar

Python is a particularly appealing language to carry out data analysis, owing in part to its user-friendly character as well as its access to well maintained and powerful libraries like NumPy and SciPy. Still, for the purpose of analyzing…

High Energy Physics - Lattice · Physics 2024-02-01 Luis Altenkort , David Anthony Clarke , Jishnu Goswami , Hauke Sandmeyer

Static analysis of structures is a fundamental step for determining the stability of structures. Both linear and non-linear static analyses consist of the resolution of sparse linear systems obtained by the finite element method. The…

Machine Learning · Computer Science 2022-01-17 Luca Grementieri , Francesco Finelli

Dataframes are a popular abstraction to represent, prepare, and analyze data. Despite the remarkable success of dataframe libraries in Rand Python, dataframes face performance issues even on moderately large datasets. Moreover, there is…

PaPy, which stands for parallel pipelines in Python, is a highly flexible framework that enables the construction of robust, scalable workflows for either generating or processing voluminous datasets. A workflow is created from user-written…

Programming Languages · Computer Science 2014-07-17 Marcin Cieslik , Cameron Mura

Static source code analysis is a powerful tool for finding and fixing bugs when deployed properly; it is, however, all too easy to deploy it in a way that looks good superficially, but which misses important defects, shows many false…

Software Engineering · Computer Science 2022-02-25 Flash Sheridan

Static code analysis is a powerful approach to detect quality deficiencies such as performance bottlenecks, safety violations or security vulnerabilities already during a software system's implementation. Yet, as current software systems…

Software Engineering · Computer Science 2017-10-23 Eric Bodden

We have built an open-source software system for the modeling of biomolecular reaction networks, SloppyCell, which is written in Python and makes substantial use of third-party libraries for numerics, visualization, and parallel…

Quantitative Methods · Quantitative Biology 2007-05-23 Christopher R. Myers , Ryan N. Gutenkunst , James. P. Sethna

Python has become the prime language for application development in the Data Science and Machine Learning domains. However, data scientists are not necessarily experienced programmers. While Python lets them quickly implement their…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-24 Oscar Castro , Pierrick Bruneau , Jean-Sébastien Sottet , Dario Torregrossa

Just like other software, spreadsheets can contain significant faults. Static analysis is an accepted and well-established technique in software engineering known for its capability to discover faults. In recent years, a growing number of…

Software Engineering · Computer Science 2014-01-30 Daniel Kulesz , Jan-Peter Ostberg

The increasing availability of high-quality optical and near-infrared spectroscopic data, as well as advances in modelling techniques, have greatly expanded the scientific potential of spectroscopic studies. However, the software tools…

Instrumentation and Methods for Astrophysics · Physics 2025-12-23 Daniele Gasparri , Lorenzo Morelli , Umberto Battino , Jairo Méndez Abreu , Adriana de Lorenzo-Cáceres

Different security issues are a common problem for open source packages archived to and delivered through software ecosystems. These often manifest themselves as software weaknesses that may lead to concrete software vulnerabilities. This…

Software Engineering · Computer Science 2021-12-28 Jukka Ruohonen , Kalle Hjerppe , Kalle Rindell

Static analysis techniques enhance the security, performance, and reliability of programs by analyzing and portraiting program behaviors without the need for actual execution. In essence, static analysis takes the Intermediate…

Programming Languages · Computer Science 2024-05-22 Bowen Zhang , Wei Chen , Hung-Chun Chiu , Charles Zhang

Static analysis is sound in theory, but an implementation may unsoundly fail to analyze all of a program's code. Any such omission is a serious threat to the validity of the tool's output. Our work is the first to measure the prevalence of…

Software Engineering · Computer Science 2024-07-11 Jordan Samhi , René Just , Tegawendé F. Bissyandé , Michael D. Ernst , Jacques Klein

This work proposes a framework of benchmark functions designed to facilitate the creation of test cases for numerical optimisation techniques. The framework, written in Python 3, is designed to be easy to install, use, and expand. The…

Numerical Analysis · Mathematics 2024-06-25 Luca Baronti , Marco Castellani

Synthesizing controllers for large, complex, and distributed systems is a challenging task. Numerous proposed methods exist in the literature, but it is difficult for practitioners to apply them -- most proposed synthesis methods lack…

Systems and Control · Electrical Eng. & Systems 2020-09-30 Shih-Hao Tseng , Jing Shuang Li

Python is one of the fastest-growing programming languages and currently ranks as the top language in many lists, even recently overtaking JavaScript as the top language on GitHub. Given its importance in data science and machine learning,…

Software Engineering · Computer Science 2025-02-10 Idriss Abdelmadjid , Robert Dyer

There are numerous approaches to building analysis applications across the high-energy physics community. Among them are Python-based, or at least Python-driven, analysis workflows. We aim to ease the adoption of a Python-based analysis…

Computational Physics · Physics 2018-04-25 David Lange