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This article characterizes certain small multistationary chemical reaction networks. We consider the set of fully open networks, those for which all chemical species participate in inflow and outflow, containing one non-flow (reversible or…

Dynamical Systems · Mathematics 2013-01-18 Badal Joshi

We establish that mass conserving single terminal-linkage networks of chemical reactions admit positive steady states regardless of network deficiency and the choice of reaction rate constants. This result holds for closed systems without…

Molecular Networks · Quantitative Biology 2015-03-19 Santiago Akle , Onkar Dalal , Ronan M. T. Fleming , Michael Saunders , Nicole Taheri , Yinyu Ye

We study the one dimensional three species monomer-monomer reaction model in the reaction controlled limit using mean-field theory and dynamic Monte Carlo simulations. The phase diagram consists of a reactive steady state bordered by three…

Statistical Mechanics · Physics 2009-10-31 Kevin E. Bassler , Dana A. Browne

With the increasing complexity of time-delayed systems, the diversification of boundary types of chemical reaction systems poses a challenge for persistence analysis. This paper focuses on delayed complex balanced mass action systems…

Dynamical Systems · Mathematics 2023-03-29 Xiaoyu Zhang , Chuanhou Gao , Denis Dochain

In this paper, we carry out a global qualitative analysis of a reduced planar quartic Topp system which models the dynamics of diabetes. In particular, studying global bifurcations, we prove that such a system can have at most two limit…

Quantitative Methods · Quantitative Biology 2019-04-11 Valery A. Gaiko

We propose a general mechanism for generating limit cycle (LC) oscillations by coupling a linear bosonic mode to a dissipative nonlinear bosonic mode. By analyzing the stability matrix, we show that LCs arise due to a supercritical Hopf…

We consider a stochastic queueing system modelling the behaviour of a wireless network with nodes employing a discrete-time version of the standard decentralised medium access algorithm. The system is {\em unsaturated} -- each node receives…

Networking and Internet Architecture · Computer Science 2018-03-21 Seva Shneer , Alexander Stolyar

We demonstrate that a potential coexists with limit cycle. Here the potential determines the final distribution of population. Our demonstration consists of three steps: We first show the existence of limit from a typical physical sciences…

Chaotic Dynamics · Physics 2007-05-23 X. -M. Zhu , L. Yin , P. Ao

We show that there are two classes of finite size effects for dynamic models taking place on a scale-free topology. Some models in finite networks show a behavior that depends only on the system size N. Others present an additional distinct…

Statistical Mechanics · Physics 2008-04-21 Claudio Castellano , Romualdo Pastor-Satorras

Peng et al.(2020) formulated one-way fluxes for a general chemical reaction far from equilibrium, with arbitrary complex mechanisms, multiple intermediates, and internal kinetic cycles. Species are classified into internal Y's and external…

Probability · Mathematics 2021-11-16 Yong Chen , Wu-Jun Gao , Lu-Yao Qiao , Ying Sheng

We give a general existence result for interacting particle systems with local interactions and bounded jump rates but noncompact state space at each site. We allow for jump events at a site that affect the state of its neighbours. We give…

Probability · Mathematics 2008-04-04 Mathew D. Penrose

We study the steady state of a stochastic particle system on a two-dimensional lattice, with particle influx, diffusion and desorption, and the formation of a dimer when particles meet. Surface processes are thermally activated, with…

Statistical Mechanics · Physics 2015-05-30 A. Wolff , I. Lohmar , J. Krug , O. Biham

We consider a natural class of reaction networks which consist of reactions where either two species can inactivate each other (i.e., sequestration), or some species can be transformed into another (i.e., transmutation), in a way that gives…

Dynamical Systems · Mathematics 2022-04-12 Gheorghe Craciun , Badal Joshi , Casian Pantea , Ike Tan

We study properties of !-limit sets of multivalued semiflows like chain recurrence or the existence of cyclic chains. First, we prove that under certain conditions the omega-limit set of a trajectory is chain recurrent, applying this result…

Dynamical Systems · Mathematics 2025-01-10 Oleksiy V. Kapustyan , Pavlo O. Kasyanov , José Valero

To model bio-chemical reaction systems with diffusion one can either use stochastic, microscopic reaction-diffusion master equations or deterministic, macroscopic reaction-diffusion system. The connection between these two models is not…

Analysis of PDEs · Mathematics 2023-06-21 Malcolm Egan , Bao Quoc Tang

In view of recent microrheology experiments we re-examine the problem of a rigid sphere oscillating inside a dilute polymer network. The network and its solvent are treated using the two-fluid model. We show that the dynamics of the medium…

Soft Condensed Matter · Physics 2015-05-15 Haim Diamant

We present a systematic mathematical analysis of the qualitative steady-state response to rate perturbations in large classes of reaction networks. This includes multimolecular reactions and allows for catalysis, enzymatic reactions,…

Dynamical Systems · Mathematics 2017-11-22 Bernhard Brehm , Bernold Fiedler

This paper investigates the multiplicity and the number of limit cycles for planar piecewise linear system divided into two regions by a straight line and each linear subsystem has a node. Through constructing Poincare half maps and a…

Dynamical Systems · Mathematics 2025-06-10 Lu Chen , Changjian Liu

We present a stochastic, time-discrete boolean model which mimics the mesoscopic dynamics of the desorption reactions $A+A\to A+S$ and $A+A\to S+S$ in a 1D lattice. In the continuous-time limit, we derive a hierarchy of dynamical equations…

Statistical Mechanics · Physics 2009-11-07 E. Abad , P. Grosfils , G. Nicolis

We develop a cross-border market model for two countries based on a continuous trading mechanism, in which the transmission capacities that enable transactions between market participants from different countries are limited. Our market…

Probability · Mathematics 2024-11-26 Cassandra Milbradt , Dörte Kreher