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The emergence and development of cancer is a consequence of the accumulation over time of genomic mutations involving a specific set of genes, which provides the cancer clones with a functional selective advantage. In this work, we model…

Machine Learning · Computer Science 2017-03-10 Daniele Ramazzotti , Marco S. Nobile , Paolo Cazzaniga , Giancarlo Mauri , Marco Antoniotti

P-splines provide a flexible setting for modeling nonlinear model components based on a discretized penalty structure with a relatively simple computational backbone. Under a Bayesian inferential framework based on Markov chain Monte Carlo,…

Methodology · Statistics 2025-11-03 Oswaldo Gressani , Paul H. C. Eilers

A canonical approach to approximating the partition function of a Gibbs distribution via sampling is simulated annealing. This method has led to efficient reductions from counting to sampling, including: $\bullet$ classic non-adaptive…

Data Structures and Algorithms · Computer Science 2026-04-07 Hongyang Liu , Yitong Yin , Yiyao Zhang

A Bayesian network is a widely used probabilistic graphical model with applications in knowledge discovery and prediction. Learning a Bayesian network (BN) from data can be cast as an optimization problem using the well-known…

Artificial Intelligence · Computer Science 2018-11-14 Zhenyu A. Liao , Charupriya Sharma , James Cussens , Peter van Beek

Probabilistic graphical models (PGMs) provide a compact and flexible framework to model very complex real-life phenomena. They combine the probability theory which deals with uncertainty and logical structure represented by a graph which…

Machine Learning · Statistics 2023-02-01 Maryia Shpak

With the end of Moore's Law, there is a growing demand for rapid architectural innovations in modern processors, such as RISC-V custom extensions, to continue performance scaling. Program sampling is a crucial step in microprocessor design,…

Hardware Architecture · Computer Science 2023-04-19 Yuanwei Fang , Zihao Liu , Yanheng Lu , Jiawei Liu , Jiajie Li , Yi Jin , Jian Chen , Yenkuang Chen , Hongzhong Zheng , Yuan Xie

A Bayesian network is a widely used probabilistic graphical model with applications in knowledge discovery and prediction. Learning a Bayesian network (BN) from data can be cast as an optimization problem using the well-known…

Artificial Intelligence · Computer Science 2020-09-01 Zhenyu A. Liao , Charupriya Sharma , James Cussens , Peter van Beek

This paper describes a new library for learning Bayesian networks from data containing discrete and continuous variables (mixed data). In addition to the classical learning methods on discretized data, this library proposes its algorithm…

Machine Learning · Statistics 2021-06-25 Anna V. Bubnova , Irina Deeva , Anna V. Kalyuzhnaya

Feature subset selection, as a special case of the general subset selection problem, has been the topic of a considerable number of studies due to the growing importance of data-mining applications. In the feature subset selection problem…

Machine Learning · Computer Science 2014-11-13 Tofigh Naghibi , Sarah Hoffmann , Beat Pfister

The Bulk-Synchronous Parallel model of computation has been used for the architecture independent design and analysis of parallel algorithms whose performance is expressed not only in terms of problem size n but also in terms of parallel…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-08-29 Alexandros V. Gerbessiotis , Constantinos J. Siniolakis

The digital age has completely transformed the way that information is processed and stored, which makes cybersecurity a crucial field of research. Cybersecurity contains many different domains, but this work focuses on Intrusion Detection…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-12 Rebekah Lane , Logan Cummins , Andy Perkins , George Trawick , Ioana Banicescu , Sudip Mittal

We present the Parallel, Forward-Backward with Pruning (PFBP) algorithm for feature selection (FS) in Big Data settings (high dimensionality and/or sample size). To tackle the challenges of Big Data FS PFBP partitions the data matrix both…

Bayesian optimization is a broadly applied methodology to optimize the expensive black-box function. Despite its success, it still faces the challenge from the high-dimensional search space. To alleviate this problem, we propose a novel…

Machine Learning · Computer Science 2020-10-20 Jingfan Chen , Guanghui Zhu , Chunfeng Yuan , Yihua Huang

Similarity graphs are an active research direction for the nearest neighbor search (NNS) problem. New algorithms for similarity graph construction are continuously being proposed and analyzed by both theoreticians and practitioners.…

Machine Learning · Computer Science 2020-02-14 Dmitry Baranchuk , Artem Babenko

The focus in this paper is Bayesian system identification based on noisy incomplete modal data where we can impose spatially-sparse stiffness changes when updating a structural model. To this end, based on a similar hierarchical sparse…

Applications · Statistics 2017-02-07 Yong Huang , James L. Beck , Hui Li

Markov Chain Monte Carlo (MCMC) algorithms do not scale well for large datasets leading to difficulties in Neural Network posterior sampling. In this paper, we propose Penalty Bayesian Neural Networks - PBNNs, as a new algorithm that allows…

Machine Learning · Statistics 2024-09-24 Eiji Kawasaki , Markus Holzmann , Lawrence Adu-Gyamfi

Main approaches for learning Bayesian networks can be classified as constraint-based, score-based or hybrid methods. Although high-dimensional consistency results are available for constraint-based methods like the PC algorithm, such…

Statistics Theory · Mathematics 2018-02-06 Preetam Nandy , Alain Hauser , Marloes H. Maathuis

In this paper we develop optimal algorithms in the binary-forking model for a variety of fundamental problems, including sorting, semisorting, list ranking, tree contraction, range minima, and ordered set union, intersection and difference.…

Data Structures and Algorithms · Computer Science 2020-06-26 Guy E. Blelloch , Jeremy T. Fineman , Yan Gu , Yihan Sun

We investigate the theoretical limits of pipeline parallel learning of deep learning architectures, a distributed setup in which the computation is distributed per layer instead of per example. For smooth convex and non-convex objective…

Machine Learning · Statistics 2019-10-14 Igor Colin , Ludovic Dos Santos , Kevin Scaman

We introduce a method for the problem of learning the structure of a Bayesian network using the quantum adiabatic algorithm. We do so by introducing an efficient reformulation of a standard posterior-probability scoring function on graphs…