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In the early days of gene expression data, researchers have focused on gene-level analysis, and particularly on finding differentially expressed genes. This usually involved making a simplifying assumption that genes are independent, which…

Applications · Statistics 2021-06-29 Haim Bar , Seojin Bang

We extend the concept of graph isomorphisms to multilayer networks with any number of "aspects" (i.e., types of layering). In developing this generalization, we identify multiple types of isomorphisms. For example, in multilayer networks…

Physics and Society · Physics 2017-02-17 Mikko Kivelä , Mason A. Porter

This work studies the limitations of uniquely identifying the structure (i.e., topology) of a networked linear system from partial measurements of its nodal dynamics. In general, many networks can be consistent with these measurements; this…

Systems and Control · Electrical Eng. & Systems 2026-03-13 Jaidev Gill , Jing Shuang Li

Graph anomaly detection on attributed networks has become a prevalent research topic due to its broad applications in many influential domains. In real-world scenarios, nodes and edges in attributed networks usually display distinct…

Social and Information Networks · Computer Science 2022-08-18 Shujie Yang , Binchi Zhang , Shangbin Feng , Zhaoxuan Tan , Qinghua Zheng , Jun Zhou , Minnan Luo

Many real-world complex systems consist of a set of elementary units connected by relationships of different kinds. All such systems are better described in terms of multiplex networks, where the links at each layer represent a different…

Physics and Society · Physics 2014-03-17 Federico Battiston , Vincenzo Nicosia , Vito Latora

The classical setting of community detection consists of networks exhibiting a clustered structure. To more accurately model real systems we consider a class of networks (i) whose edges may carry labels and (ii) which may lack a clustered…

Statistics Theory · Mathematics 2014-06-27 Jiaming Xu , Laurent Massoulié , Marc Lelarge

A multilevel network is defined as the junction of two interaction networks, one level representing the interactions between individuals and the other the interactions between organizations. The levels are linked by an affiliation…

Methodology · Statistics 2023-12-04 Saint-Clair Chabert-Liddell , Pierre Barbillon , Sophie Donnet , Emmanuel Lazega

In increasingly many settings, data sets consist of multiple samples from a population of networks, with vertices aligned across these networks. For example, brain connectivity networks in neuroscience consist of measures of interaction…

Statistics Theory · Mathematics 2021-05-11 Keith Levin , Asad Lodhia , Elizaveta Levina

Quantification of symmetries in complex networks is typically done globally in terms of automorphisms. Extending previous methods to locally assess the symmetry of nodes is not straightforward. Here we present a new framework to quantify…

Networks are ubiquitous structure that describes complex relationships between different entities in the real world. As a critical component of prediction task over nodes in networks, learning the feature representation of nodes has become…

Machine Learning · Computer Science 2018-09-10 Hansheng Xue , Jiajie Peng , Xuequn Shang

Network models describe the brain as sets of nodes and edges that represent its distributed organization. So far, most discoveries in network neuroscience have prioritized insights that highlight distinct groupings and specialized…

Neurons and Cognition · Quantitative Biology 2021-05-18 Joshua Faskowitz , Richard F. Betzel , Olaf Sporns

In recent years, unsupervised and self-supervised graph representation learning has gained popularity in the research community. However, most proposed methods are focused on homogeneous networks, whereas real-world graphs often contain…

Machine Learning · Computer Science 2024-02-29 Piotr Bielak , Tomasz Kajdanowicz

A plethora of networks is being collected in a growing number of fields, including disease transmission, international relations, social interactions, and others. As data streams continue to grow, the complexity associated with these highly…

Machine Learning · Statistics 2018-09-11 Daniele Durante , Nabanita Mukherjee , Rebecca C. Steorts

Unraveling the co-expression of genes across studies enhances the understanding of cellular processes. Inferring gene co-expression networks from transcriptome data presents many challenges, including spurious gene correlations, sample…

Machine Learning · Statistics 2024-10-01 Teodora Pandeva , Martijs Jonker , Leendert Hamoen , Joris Mooij , Patrick Forré

The modern definition of optical coherence highlights a frequency dependent function based on a matrix of spectra and cross-spectra. Due to general properties of matrices, such a function is invariant in changes of basis. In this article,…

Optics · Physics 2016-03-09 Bernard Lacaze

Psychological network approaches propose to see symptoms or questionnaire items as interconnected nodes, with links between them reflecting pairwise statistical dependencies evaluated cross-sectional, time-series, or panel data. These…

Context: Edge graphs are graphs whose edges are labelled with identifiers, and nodes can have multiple edges between them. They are used to model a wide range of systems, including networks with distances or degrees of connection and…

Programming Languages · Computer Science 2024-03-05 Jack Liell-Cock , Tom Schrijvers

Our understanding of a variety of phenomena in physics, biology and economics crucially depends on the analysis of multivariate time series. While a wide range of tools and techniques for time series analysis already exist, the increasing…

Physics and Society · Physics 2015-10-27 Lucas Lacasa , Vincenzo Nicosia , Vito Latora

Recently, the Network Representation Learning (NRL) techniques, which represent graph structure via low-dimension vectors to support social-oriented application, have attracted wide attention. Though large efforts have been made, they may…

Social and Information Networks · Computer Science 2019-05-28 Hao Wang , Tong Xu , Qi Liu , Defu Lian , Enhong Chen , Dongfang Du , Han Wu , Wen Su

We introduce a methodology based on averaging similarity matrices with the aim of integrating the layers of a multiplex network into a single monoplex network. Multiplex networks are adopted for modelling a wide variety of real-world…

Physics and Society · Physics 2025-04-30 Federica Baccini , Lucio Barabesi , Eugenio Petrovich