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Modern datasets and models are notoriously difficult to explore and analyze due to their inherent high dimensionality and massive numbers of samples. Existing visualization methods which employ dimensionality reduction to two or three…

Machine Learning · Computer Science 2018-08-01 David M. Chan , Roshan Rao , Forrest Huang , John F. Canny

Dimensionality reduction techniques are widely used for visualizing high-dimensional data in two dimensions. Existing methods are typically designed to preserve either local (e.g., $t$-SNE, UMAP) or global (e.g., MDS, PCA) structure of the…

Machine Learning · Computer Science 2026-02-02 Noël Kury , Dmitry Kobak , Sebastian Damrich

Dimensionality reduction is often used as an initial step in data exploration, either as preprocessing for classification or regression or for visualization. Most dimensionality reduction techniques to date are unsupervised; they do not…

Machine Learning · Statistics 2020-06-17 Jake S. Rhodes , Adele Cutler , Guy Wolf , Kevin R. Moon

In contrast to classical techniques for exploratory analysis of high-dimensional data sets, such as principal component analysis (PCA), neighbor embedding (NE) techniques tend to better preserve the local structure/topology of…

Machine Learning · Statistics 2022-09-07 Roman Josef Rainer , Michael Mayr , Johannes Himmelbauer , Ramin Nikzad-Langerodi

Neighbor embeddings are a family of methods for visualizing complex high-dimensional datasets using $k$NN graphs. To find the low-dimensional embedding, these algorithms combine an attractive force between neighboring pairs of points with a…

Machine Learning · Computer Science 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

Biomedical research often produces high-dimensional data confounded by batch effects such as systematic experimental variations, different protocols and subject identifiers. Without proper correction, low-dimensional representation of…

Depth information provides valuable insights into the 3D structure especially the outline of objects, which can be utilized to improve the semantic segmentation tasks. However, a naive fusion of depth information can disrupt feature and…

Computer Vision and Pattern Recognition · Computer Science 2024-08-20 Wei Sun , Yuan Li , Qixiang Ye , Jianbin Jiao , Yanzhao Zhou

Dimensionality reduction techniques are essential for visualizing and analyzing high-dimensional biological sequencing data. t-distributed Stochastic Neighbor Embedding (t-SNE) is widely used for this purpose, traditionally employing the…

Machine Learning · Computer Science 2025-12-19 Avais Jan , Prakash Chourasia , Sarwan Ali , Murray Patterson

Dimensional data reduction methods are fundamental to explore and visualize large data sets. Basic requirements for unsupervised data exploration are simplicity, flexibility and scalability. However, current methods show complex…

Machine Learning · Computer Science 2021-12-03 Joan Garriga , Frederic Bartumeus

Stochastic Neighbor Embedding (SNE) algorithms like UMAP and tSNE often produce visualizations that do not preserve the geometry of noisy and high dimensional data. In particular, they can spuriously separate connected components of the…

Machine Learning · Computer Science 2025-09-05 Tristan Luca Saidi , Abigail Hickok , Bastian Rieck , Andrew J. Blumberg

T-distributed stochastic neighbor embedding (t-SNE) is a well-known algorithm for visualizing high-dimensional data by finding low-dimensional representations. In this paper, we study the convergence of t-SNE with generalized kernels and…

Machine Learning · Statistics 2025-06-10 Yi Gu

Visualizing high dimensional data by projecting them into two or three dimensional space is one of the most effective ways to intuitively understand the data's underlying characteristics, for example their class neighborhood structure.…

Machine Learning · Computer Science 2020-04-06 Pitoyo Hartono

Dimensionality reduction methods such as t-SNE and UMAP are popular methods for visualizing data with a potential (latent) clustered structure. They are known to group data points at the same time as they embed them, resulting in…

Machine Learning · Computer Science 2025-09-04 Elizabeth Coda , Ery Arias-Castro , Gal Mishne

Objective measures of image quality generally operate by comparing pixels of a "degraded" image to those of the original. Relative to human observers, these measures are overly sensitive to resampling of texture regions (e.g., replacing one…

Computer Vision and Pattern Recognition · Computer Science 2021-01-25 Keyan Ding , Kede Ma , Shiqi Wang , Eero P. Simoncelli

Texture is an important spatial feature which plays a vital role in content based image retrieval. The enormous growth of the internet and the wide use of digital data have increased the need for both efficient image database creation and…

Computer Vision and Pattern Recognition · Computer Science 2011-11-11 B. Vijayalakshmi , V. Subbiah Bharathi

We introduce an improved unsupervised clustering protocol specially suited for large-scale structured data. The protocol follows three steps: a dimensionality reduction of the data, a density estimation over the low dimensional…

Machine Learning · Computer Science 2019-11-05 Joan Garriga , Frederic Bartumeus

With the development of information technology, we have witnessed an age of data explosion which produces a large variety of data filled with redundant information. Because dimension reduction is an essential tool which embeds…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Huibing Wang , Jinjia Peng , Xianping Fu

Supervised pixel-based texture classification is usually performed in the feature space. We propose to perform this task in (dis)similarity space by introducing a new compression-based (dis)similarity measure. The proposed measure utilizes…

Computer Vision and Pattern Recognition · Computer Science 2013-11-27 Mehrdad J. Gangeh , Ali Ghodsi , Mohamed S. Kamel

With the development of feature extraction technique, one sample always can be represented by multiple features which locate in high-dimensional space. Multiple features can re ect various perspectives of one same sample, so there must be…

Computer Vision and Pattern Recognition · Computer Science 2018-07-30 Huibing Wang , Lin Feng , Adong Kong , Bo Jin

Stochastic Neighbor Embedding (SNE) methods minimize the divergence between the similarity matrix of a high-dimensional data set and its counterpart from a low-dimensional embedding, leading to widely applied tools for data visualization.…

Machine Learning · Computer Science 2018-09-13 Yao Lu , Jukka Corander , Zhirong Yang