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A primary challenge in metagenomics is reconstructing individual microbial genomes from the mixture of short fragments created by sequencing. Recent work leverages the sparsity of the assembly graph to find $r$-dominating sets which enable…

Data Structures and Algorithms · Computer Science 2023-01-24 Yosuke Mizutani , Annie Staker , Blair D. Sullivan

This paper proposes an improved quasi-Newton penalty decomposition algorithm for the minimization of continuously differentiable functions, possibly nonconvex, over sparse symmetric sets. The method solves a sequence of penalty subproblems…

Optimization and Control · Mathematics 2026-01-21 Ahmad Mousavi , Morteza Kimiaei , Saman Babaie-Kafaki , Vyacheslav Kungurtsev

As the number of samples and dimensionality of optimization problems related to statistics an machine learning explode, block coordinate descent algorithms have gained popularity since they reduce the original problem to several smaller…

Machine Learning · Computer Science 2016-06-24 Rémi Flamary , Alain Rakotomamonjy , Gilles Gasso

Data-driven artificial intelligence (AI) techniques are becoming prominent for learning in support of data compression, but are focused on standard problems such as text compression. To instead address the emerging problem of semantic…

Information Theory · Computer Science 2024-04-05 Haizi Yu , Lav R. Varshney

Mining frequent subgraphs is an area of research where we have a given set of graphs (each graph can be seen as a transaction), and we search for (connected) subgraphs contained in many of these graphs. In this work we will discuss…

Artificial Intelligence · Computer Science 2007-05-23 Edgar H. de Graaf , Joost N. Kok , Walter A. Kosters

Lattices are an efficient and effective method to encode ambiguity of upstream systems in natural language processing tasks, for example to compactly capture multiple speech recognition hypotheses, or to represent multiple linguistic…

Computation and Language · Computer Science 2019-06-05 Matthias Sperber , Graham Neubig , Ngoc-Quan Pham , Alex Waibel

Cybersecurity has become essential worldwide and at all levels, concerning individuals, institutions, and governments. A basic principle in cybersecurity is to be always alert. Therefore, automation is imperative in processes where the…

Machine Learning · Computer Science 2025-05-08 Mateo Lopez-Ledezma , Gissel Velarde

The main purpose of this paper is to study the NP-complete subset-sum problem, not in the usual context of time-complexity-based classification of the algorithms (exponential/polynomial), but through a new kind of algorithmic classification…

Computational Complexity · Computer Science 2018-11-20 Antonios Syreloglou

Federated learning has a variety of applications in multiple domains by utilizing private training data stored on different devices. However, the aggregation process in federated learning is highly vulnerable to adversarial attacks so that…

Machine Learning · Computer Science 2021-01-12 Shuhao Fu , Chulin Xie , Bo Li , Qifeng Chen

Currently deployed public-key cryptosystems will be vulnerable to attacks by full-scale quantum computers. Consequently, "quantum resistant" cryptosystems are in high demand, and lattice-based cryptosystems, based on a hard problem known as…

Cryptography and Security · Computer Science 2023-04-25 Emily Wenger , Mingjie Chen , François Charton , Kristin Lauter

Sum-of-norms clustering is a clustering formulation based on convex optimization that automatically induces hierarchy. Multiple algorithms have been proposed to solve the optimization problem: subgradient descent by Hocking et al., ADMM and…

Machine Learning · Computer Science 2021-07-09 Tao Jiang , Stephen Vavasis

A numerical method for approximating weak solutions of an aggregation equation with degenerate diffusion is introduced. The numerical method consists of a stabilized finite element method together with a mass lumping technique and an extra…

In recent years, the rise of cyber threats has emphasized the need for robust malware detection systems, especially on mobile devices. Malware, which targets vulnerabilities in devices and user data, represents a substantial security risk.…

Cryptography and Security · Computer Science 2025-04-08 J. V. S. Souza , C. B. Vieira , G. D. C. Cavalcanti , R. M. O. Cruz

We consider several subgroup-related algorithmic questions in groups, modeled after the classic computational lattice problems, and study their computational complexity. We find polynomial time solutions to problems like finding a subgroup…

Group Theory · Mathematics 2015-08-12 Alexei Myasnikov , Andrey Nikolaev , Alexander Ushakov

This monograph presents a class of algorithms called coordinate descent algorithms for mathematicians, statisticians, and engineers outside the field of optimization. This particular class of algorithms has recently gained popularity due to…

Optimization and Control · Mathematics 2017-01-16 Hao-Jun Michael Shi , Shenyinying Tu , Yangyang Xu , Wotao Yin

Safety alignment in Large Language Models (LLMs) often creates a systematic discrepancy between a model's aligned output and the underlying pre-aligned data distribution. We propose a framework in which the effect of safety alignment on…

Computation and Language · Computer Science 2026-02-03 Yuxuan Lu , Yongkang Guo , Yuqing Kong

We consider a variant of the clustering problem for a complete weighted graph. The aim is to partition the nodes into clusters maximizing the sum of the edge weights within the clusters. This problem is known as the clique partitioning…

Social and Information Networks · Computer Science 2023-09-15 Alexander Belyi , Stanislav Sobolevsky , Alexander Kurbatski , Carlo Ratti

This thesis presents two similarity-based approaches to sparse data problems. The first approach is to build soft, hierarchical clusters: soft, because each event belongs to each cluster with some probability; hierarchical, because cluster…

cmp-lg · Computer Science 2008-02-03 Lillian Lee

A new approach on cryptanalysis is proposed where the goal is to explore the fundamental limits of a specific class of attacks against a particular cryptosystem. As a first step, the approach is applied on ABSG, which is an LFSR-based…

Cryptography and Security · Computer Science 2008-05-05 Yucel Altug , M. Kivanc Mihcak

Securing neural networks (NNs) against model extraction and parameter exfiltration attacks is an important problem primarily because modern NNs take a lot of time and resources to build and train. We observe that there are no…

Cryptography and Security · Computer Science 2023-11-07 Nivedita Shrivastava , Smruti R. Sarangi