Related papers: RePair Grammars are the Smallest Grammars for Fibo…
A string attractor of a string $T[1..|T|]$ is a set of positions $\Gamma$ of $T$ such that any substring $w$ of $T$ has an occurrence that crosses a position in $\Gamma$, i.e., there is a position $i$ such that $w = T[i..i+|w|-1]$ and the…
The compact directed acyclic word graph (CDAWG) is the minimal compact automaton that recognizes all the suffixes of a string. Classically the CDAWG has been implemented as an index of the string it recognizes, requiring $o(n)$ space for a…
Neighborhood queries and triple queries are the most common queries on graphs; thus, it is desirable to answer them efficiently on compressed data structures. We present a compression scheme called Incidence-Type-RePair (ITR) for graphs…
In [1], we introduced a family of combinatorial designs, which we call "alphabet reduction pairs of arrays", ARPAs for short. These designs depend on three integer parameters $q, p \leq q, k\leq p$: $q$ is the size of the symbol set $\{0, 1…
Grammar-based compression is a popular and powerful approach to compressing repetitive texts but until recently its relatively poor time-space trade-offs during real-life construction made it impractical for truly massive datasets such as…
An $n$-length binary word is $q$-decreasing, $q\geq 1$, if every of its length maximal factor of the form $0^a1^b$ satisfies $a=0$ or $q\cdot a > b$.We show constructively that these words are in bijection with binary words having no…
Compression of inverted lists with methods that support fast intersection operations is an active research topic. Most compression schemes rely on encoding differences between consecutive positions with techniques that favor small numbers.…
We describe a grammar for DNA sequencing reads from which we can compute the BWT directly. Our motivation is to perform in succinct space genomic analyses that require complex string queries not yet supported by repetition-based…
Recurrent neural language models are the state-of-the-art models for language modeling. When the vocabulary size is large, the space taken to store the model parameters becomes the bottleneck for the use of recurrent neural language models.…
Matrix grammars are one of the first approaches ever proposed in regulated rewriting, prescribing that rules have to be applied in a certain order. Originally, they have been introduced by \'Abrah\'am on linguistic grounds. In traditional…
We present a new algorithm for subsequence matching in grammar compressed strings. Given a grammar of size $n$ compressing a string of size $N$ and a pattern string of size $m$ over an alphabet of size $\sigma$, our algorithm uses…
The Smallest Grammar Problem -- the problem of finding the smallest context-free grammar that generates exactly one given sequence -- has never been successfully applied to grammatical inference. We investigate the reasons and propose an…
In this paper, we explore applications of combinatorics on words across various domains, including data compression, error detection, cryptographic protocols, and pseudorandom number generation. The examination of the theoretical…
A simple linear-time algorithm for constructing a linear context-free tree grammar of size O(rg + r g log (n/r g))for a given input tree T of size n is presented, where g is the size of a minimal linear context-free tree grammar for T, and…
One of the most famous and investigated lossless data-compression scheme is the one introduced by Lempel and Ziv about 40 years ago. This compression scheme is known as "dictionary-based compression" and consists of squeezing an input…
A prefix normal word is a binary word with the property that no substring has more 1s than the prefix of the same length. This class of words is important in the context of binary jumbled pattern matching. In this paper we present an…
The most fundamental problem considered in algorithms for text processing is pattern matching: given a pattern $p$ of length $m$ and a text $t$ of length $n$, does $p$ occur in $t$? Multiple versions of this basic question have been…
The dictionary matching problem is to locate occurrences of any pattern among a set of patterns in a given text. Massive data sets abound and at the same time, there are many settings in which working space is extremely limited. We…
This paper investigates data-driven segmentation using Re-Pair or Byte Pair Encoding-techniques. In contrast to previous work which has primarily been focused on subword units for machine translation, we are interested in the general…
A well-known fact in the field of lossless text compression is that high-order entropy is a weak model when the input contains long repetitions. Motivated by this, decades of research have generated myriads of so-called dictionary…