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Graphs are used to represent and analyze data in domains as diverse as physics, biology, chemistry, planetary science, and the social sciences. Across domains, random graph models relate generative processes to expected graph properties,…
Token graphs, or symmetric powers of graphs, see \cite{alavi2002survey} and \cite{Fabila-Monroy2012}, are defined on the $k$-combinations of the vertex set of some graph $L$, where edges exist between two such combinations, if their…
Seeking effective neural networks is a critical and practical field in deep learning. Besides designing the depth, type of convolution, normalization, and nonlinearities, the topological connectivity of neural networks is also important.…
Network-based modeling of complex systems and data using the language of graphs has become an essential topic across a range of different disciplines. Arguably, this graph-based perspective derives its success from the relative simplicity…
We propose a novel approach for learning node representations in directed graphs, which maintains separate views or embedding spaces for the two distinct node roles induced by the directionality of the edges. We argue that the previous…
Network topology is a flourishing interdisciplinary subject that is relevant for different disciplines including quantum gravity and brain research. The discrete topological objects that are investigated in network topology are simplicial…
Many interesting examples of operator algebras, both self-adjoint and non-self-adjoint, can be constructed from directed graphs. In this survey, we overview the construction of $C^*$-algebras from directed graphs and from two…
Within the graph learning community, conventional wisdom dictates that spectral convolutional networks may only be deployed on undirected graphs: Only there could the existence of a well-defined graph Fourier transform be guaranteed, so…
We provide algorithms involving edge slides, for a connected simple graph to evolve in a finite number of steps to another connected simple graph in a prescribed configuration, and for the regularization of such a graph by the minimization…
With recent advances in high-throughput cell biology the amount of cellular biological data has grown drastically. Such data is often modeled as graphs (also called networks) and studying them can lead to new insights into molecule-level…
Markov Networks are widely used through out computer vision and machine learning. An important subclass are the Associative Markov Networks which are used in a wide variety of applications. For these networks a good approximate minimum cost…
Many networks describing complex systems are directed: the interactions between elements are not symmetric. Recent work has shown that these networks can display properties such as trophic coherence or non-normality, which in turn affect…
Simplicial complexes describe collaboration networks, protein interaction networks and brain networks and in general network structures in which the interactions can include more than two nodes. In real applications, often simplicial…
The coarsest approximation of the structure of a complex network, such as the Internet, is a simple undirected unweighted graph. This approximation, however, loses too much detail. In reality, objects represented by vertices and edges in…
Topological deep learning (TDL) has emerged as a powerful tool for modeling higher-order interactions in relational data. However, phenomena such as oversquashing in topological message-passing remain understudied and lack theoretical…
In weighted graphs the shortest path between two nodes is often reached through an indirect path, out of all possible connections, leading to structural redundancies which play key roles in the dynamics and evolution of complex networks. We…
Various simplicial complexes can be associated with a graph. Box complexes form an important families of such simplicial complexes and are especially useful for providing lower bounds on the chromatic number of the graph via some of their…
This paper introduces a new category, Edgl, of enriched differential graded Lie algebras (edgl), directly related to the topology of all connected CW complexes and simplicial sets. It is equipped with a homotopy theory analogous to that…
We propose a convenient category for directed homotopy consisting of preordered topological spaces generated by cubes. Its main advantage is that, like the category of topological spaces generated by simplices suggested by J. H. Smith, it…
Recently, the classical configuration model for random graphs with given degree distribution has been extensively used as a null model in contraposition to real networks with the same degree distribution. In this paper, we briefly review…