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We study model embeddability, which is a variation of the famous embedding problem in probability theory, when apart from the requirement that the Markov matrix is the matrix exponential of a rate matrix, we additionally ask that the rate…

Populations and Evolution · Quantitative Biology 2021-04-02 Muhammad Ardiyansyah , Dimitra Kosta , Kaie Kubjas

We explore a class of centrosymmetric matrices whose entries are polynomials in two variables, referred to as DNA matrices. Our motivation stems from an unexpected connection between these matrices and invariant polynomials under the action…

Rings and Algebras · Mathematics 2025-03-27 Miriam Manoel , Leandro Nery

We investigate convex polytopes of doubly stochastic matrices having special structures: symmetric, Hankel symmetric, centrosymmetric, and both symmetric and Hankel symmetric. We determine dimensions of these polytopes and classify their…

Combinatorics · Mathematics 2017-12-11 Richard R. Brualdi , Lei Cao

We review various combinatorial applications of field theoretical and matrix model approaches to equilibrium statistical physics involving the enumeration of fixed and random lattice model configurations. We show how the structures of the…

Statistical Mechanics · Physics 2007-05-23 P. Di Francesco

The representation problem of finite-dimensional Markov matrices in Markov semigroups is revisited, with emphasis on concrete criteria for matrix subclasses of theoretical or practical relevance, such as equal-input, circulant, symmetric or…

Probability · Mathematics 2020-03-05 Michael Baake , Jeremy Sumner

The classical embeddability problem asks whether a given stochastic matrix $T$, describing transition probabilities of a $d$-level system, can arise from the underlying homogeneous continuous-time Markov process. Here, we investigate the…

In this note, we characterize the embeddability of generic Kimura 3ST Markov matrices in terms of their eigenvalues. As a consequence, we are able to compute the volume of such matrices relative to the volume of all Markov matrices within…

Populations and Evolution · Quantitative Biology 2019-02-25 Jordi Roca-Lacostena , Jesús Fernández-Sánchez

We investigate how embedding dimension affects the emergence of an internal "world model" in a transformer trained with reinforcement learning to perform bubble-sort-style adjacent swaps. Models achieve high accuracy even with very small…

Machine Learning · Computer Science 2025-10-22 Brady Bhalla , Honglu Fan , Nancy Chen , Tony Yue YU

In this thesis generalizations of matrix and eigenvalue models involving supersymmetry are discussed. Following a brief review of the Hermitian one matrix model, the c=-2 matrix model is considered. Built from a matrix valued superfield…

High Energy Physics - Theory · Physics 2016-09-06 Jan C. Plefka

Deciding whether a Markov matrix is embeddable (i.e. can be written as the exponential of a rate matrix) is an open problem even for $4\times 4$ matrices. We study the embedding problem and rate identifiability for the K80 model of…

Populations and Evolution · Quantitative Biology 2019-11-28 Marta Casanellas , Jesús Fernández-Sánchez , Jordi Roca-Lacostena

It is well known that every closure system can be represented by an implicational base, or by the set of its meet-irreducible elements. In Horn logic, these are respectively known as the Horn expressions and the characteristic models. In…

Discrete Mathematics · Computer Science 2021-03-31 Oscar Defrain , Lhouari Nourine , Simon Vilmin

This work introduces a new class of symmetric matrix structures, called harmonic structures, which enable the generation of all possible directed transitions $(x_i, x_{i+1})$ over a set of $n$ symbols, without internal repetitions. Unlike…

Combinatorics · Mathematics 2025-06-23 Nicolás Agustín Martínez

In statistical relational learning, the link prediction problem is key to automatically understand the structure of large knowledge bases. As in previous studies, we propose to solve this problem through latent factorization. However, here…

Artificial Intelligence · Computer Science 2016-06-22 Théo Trouillon , Johannes Welbl , Sebastian Riedel , Éric Gaussier , Guillaume Bouchard

We explore in depth how categorical data can be processed with embeddings in the context of claim severity modeling. We develop several models that range in complexity from simple neural networks to state-of-the-art attention based…

Applications · Statistics 2021-04-09 Kevin Kuo , Ronald Richman

Characterizing whether a Markov process of discrete random variables has an homogeneous continuous-time realization is a hard problem. In practice, this problem reduces to deciding when a given Markov matrix can be written as the…

Probability · Mathematics 2021-06-23 Marta Casanellas , Jesús Fernández-Sánchez , Jordi Roca-Lacostena

This manuscript presents a novel framework that integrates higher-order symmetries and category theory into machine learning. We introduce new mathematical constructs, including hyper-symmetry categories and functorial representations, to…

Machine Learning · Computer Science 2024-09-19 Ronald Katende

We consider a linearly elastic composite medium, which consists of a homogeneous matrix containing statistically inhomogeneous random set of heterogeneities and loaded by inhomogeneous remote loading. The new general integral equation is…

Materials Science · Physics 2009-12-10 Valeriy A. Buryachenko

Matrix models have wide applications in nuclear theory, condensed matter theory and quantum field theory. I discuss supersymmetric extensions of matrix models and their applications to branched polymers, the meander problem, and…

High Energy Physics - Theory · Physics 2007-05-23 Yu. Makeenko

We employ two Tight-Binding (TB) approaches to study the electronic structure and hole or electron transfer in B-DNA monomer polymers and dimer polymers made up of $N$ monomers (base pairs): (I) at the base-pair level, using the on-site…

In this paper, we describe centering and noncentering methodology as complementary techniques for use in parametrization of broad classes of hierarchical models, with a view to the construction of effective MCMC algorithms for exploring…

Methodology · Statistics 2007-08-30 Omiros Papaspiliopoulos , Gareth O. Roberts , Martin Sköld
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