Related papers: Deterministic Non-cooperative Binding in Two-Dimen…
We consider the problem of fault-tolerance in nanoscale algorithmic self-assembly. We employ a variant of Winfree's abstract Tile Assembly Model (aTAM), the two-handed aTAM, in which square "tiles" -- a model of molecules constructed from…
Strand displacement and tile assembly systems are designed to follow prescribed kinetic rules (i.e., exhibit a specific time-evolution). However, the expected behavior in the limit of infinite time--known as thermodynamic equilibrium--is…
We construct a 2+1 dimensional model that sustains superconductivity at all temperatures. This is achieved by introducing a Chern Simons mixing term between two Abelian gauge fields A and Z. The superfluid is described by a complex scalar…
In this paper, we study the minimum number of unique tile types required for the self-assembly of thin rectangles in Winfree's abstract Tile Assembly Model (aTAM), restricted to temperature-1. Using Catalan numbers, planar self-assembly and…
In this paper we demonstrate the power of a model of tile self-assembly based on active glues which can dynamically change state. We formulate the Signal-passing Tile Assembly Model (STAM), based on the model of Padilla, Liu, and Seeman to…
Aperiodic tiling --- a form of complex global geometric structure arising through locally checkable, constant-time matching rules --- has long been closely tied to a wide range of physical, information-theoretic, and foundational…
We investigate the role of nondeterminism in Winfree's abstract Tile Assembly Model (aTAM), which was conceived to model artificial molecular self-assembling systems constructed from DNA. Of particular practical importance is to find tile…
We investigate the effective thermal conductivity of a two-phase composite with thermal resistance at the interface. The composite is obtained by introducing into an infinite homogeneous matrix a periodic set of inclusions of a different…
We prove that the abstract Tile Assembly Model (aTAM) of nanoscale self-assembly is intrinsically universal. This means that there is a single tile assembly system U that, with proper initialization, simulates any tile assembly system T.…
In geometrically frustrated assemblies, equilibrium self-limitation manifests in the form of a minimum in the free energy per subunit at a finite, multi-subunit size which results from the competition between the elastic costs of…
Is Winfree's abstract Tile Assembly Model (aTAM) "powerful?" Well, if certain tiles are required to "cooperate" in order to be able to bind to a growing tile assembly (a.k.a., temperature 2 self-assembly), then Turing universal computation…
We study tilings of the plane that combine strong properties of different nature: combinatorial and algorithmic. We prove existence of a tile set that accepts only quasiperiodic and non-recursive tilings. Our construction is based on the…
Tile-based self-assembly systems are capable of universal computation and algorithmically-directed growth. Systems capable of such behavior typically make use of "glue cooperation" in which the glues on at least $2$ sides of a tile must…
It is shown, using asymptotically exact methods, that the two dimensional repulsive Hubbard model with strongly modulated interactions exhibits ``high temperature superconductivity". Specifically, the explicit modulation, which has the same…
The algorithmic self-assembly of shapes has been considered in several models of self-assembly. For the problem of \emph{shape construction}, we consider an extended version of the Two-Handed Tile Assembly Model (2HAM), which contains…
In this paper we study algorithms for tiling problems. We show that the conditions $(T1)$ and $(T2)$ of Coven and Meyerowitz, conjectured to be necessary and sufficient for a finite set $A$ to tile the integers, can be checked in time…
We consider $d$-dimensional configurations, that is, colorings of the $d$-dimensional integer grid $\mathbb{Z}^d$ with finitely many colors. Moreover, we interpret the colors as integers so that configurations are functions $\mathbb{Z}^d…
We demonstrate existence of a tile assembly system that self-assembles the statistically self-similar Sierpinski Triangle in the Winfree-Rothemund Tile Assembly Model. This appears to be the first paper that considers self-assembly of a…
We show that in the hierarchical tile assembly model, if there is a producible assembly that overlaps a nontrivial translation of itself consistently (i.e., the pattern of tile types in the overlap region is identical in both translations),…
We present algorithmic results for the parallel assembly of many micro-scale objects in two and three dimensions from tiny particles, which has been proposed in the context of programmable matter and self-assembly for building high-yield…