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Related papers: Deep learning for drug repurposing: methods, datab…

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After emerging in China in late 2019, the novel Severe acute respiratory syndrome-like coronavirus 2 (SARS-CoV-2) spread worldwide and as of early 2021, continues to significantly impact most countries. Only a small number of coronaviruses…

Coronavirus Disease 2019 (COVID-19), which emerged in 2019, has caused millions of deaths worldwide. Although effective vaccines have been developed to mitigate severe symptoms, certain populations, particularly the elderly and those with…

Computation and Language · Computer Science 2024-12-06 Shengjun Zhu , Siyu Liu , Yang Li , Qing Lei , Hongyan Hou , Hewei Jiang , Shujuan Guo , Feng Wang , Rongshang Chen , Xionglin Fan , Shengce Tao , Jiaxin Cai

Neural network models can now recognise images, understand text, translate languages, and play many human games at human or superhuman levels. These systems are highly abstracted, but are inspired by biological brains and use only…

Neurons and Cognition · Quantitative Biology 2019-03-06 Katherine R. Storrs , Nikolaus Kriegeskorte

Development of new medications is a very lengthy and costly process. Finding novel indications for existing drugs, or drug repositioning, can serve as a useful strategy to shorten the development cycle. In this study, we present an approach…

Genomics · Quantitative Biology 2017-12-13 Kai Zhao , Hon-Cheong So

Due to SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus 2) being a novel virus, there are currently no known effective antiviral drugs capable of slowing its progress. To accelerate the discovery of potential drug candidates,…

Biomolecules · Quantitative Biology 2020-09-29 Lokesh Agrawal , Thanasis Poullikkas , Scott Eisenhower , Carlo Monsanto , Ranjith Kumar Bakku

The outbreak of the novel coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been continuously affecting human lives and communities around the world in many ways, from cities…

Machine Learning · Computer Science 2020-07-24 Ashkan Ebadi , Pengcheng Xi , Stéphane Tremblay , Bruce Spencer , Raman Pall , Alexander Wong

Effective property prediction methods can help accelerate the search for COVID-19 antivirals either through accurate in-silico screens or by effectively guiding on-going at-scale experimental efforts. However, existing prediction tools have…

Quantitative Methods · Quantitative Biology 2020-05-08 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Drug repurposing plays a critical role in accelerating treatment discovery, especially for complex and rare diseases. Biomedical knowledge graphs (KGs), which encode rich clinical associations, have been widely adopted to support this task.…

Computation and Language · Computer Science 2025-10-15 Chengrui Xiang , Tengfei Ma , Xiangzheng Fu , Yiping Liu , Bosheng Song , Xiangxiang Zeng

An accurate and efficient forecasting system is imperative to the prevention of emerging infectious diseases such as COVID-19 in public health. This system requires accurate transient modeling, lower computation cost, and fewer observation…

Machine Learning · Computer Science 2021-01-26 Dongdong Wang , Shunpu Zhang , Liqiang Wang

Deep learning methods are increasingly being applied to problems in medicine and healthcare. However, few epidemiologists have received formal training in these methods. To bridge this gap, this article introduces to the fundamentals of…

Machine Learning · Computer Science 2022-02-04 Stylianos Serghiou , Kathryn Rough

The computational drug repositioning aims to discover new uses for marketed drugs, which can accelerate the drug development process and play an important role in the existing drug discovery system. However, the number of validated…

Machine Learning · Computer Science 2022-06-02 Xinxing Yang , Genke Yang , Jian Chu

Mutating variants of COVID-19 have been reported across many US states since 2021. In the fight against COVID-19, it has become imperative to study the heterogeneity in the time-varying transmission rates for each variant in the presence of…

Populations and Evolution · Quantitative Biology 2022-05-17 K. D. Olumoyin , A. Q. M. Khaliq , K. M. Furati

With the increase of COVID-19 cases worldwide, an effective way is required to diagnose COVID-19 patients. The primary problem in diagnosing COVID-19 patients is the shortage and reliability of testing kits, due to the quick spread of the…

Image and Video Processing · Electrical Eng. & Systems 2021-12-14 Rajesh Kumar , Abdullah Aman Khan , Sinmin Zhang , Jay Kumar , Ting Yang , Noorbakhash Amiri Golalirz , Zakria , Ikram Ali , Sidra Shafiq , WenYong Wang

The novel coronavirus disease (COVID-19) constitutes a public health emergency globally. It is a deadly disease which has infected more than 230 million people worldwide. Therefore, early and unswerving detection of COVID-19 is necessary.…

Image and Video Processing · Electrical Eng. & Systems 2022-12-22 Aeyan Ashraf , Asad Malik , Zahid Khan

The de novo design of molecular structures using deep learning generative models introduces an encouraging solution to drug discovery in the face of the continuously increased cost of new drug development. From the generation of original…

Biomolecules · Quantitative Biology 2021-02-08 Yuemin Bian , Xiang-Qun Xie

The novel coronavirus (SARS-CoV-2) which causes COVID-19 is an ongoing pandemic. There are ongoing studies with up to hundreds of publications uploaded to databases daily. We are exploring the use-case of artificial intelligence and natural…

Information Retrieval · Computer Science 2021-02-16 Yutong Jin , Jie Li , Xinyu Wang , Peiyao Li , Jinjiang Guo , Junfeng Wu , Dawei Leng , Lurong Pan

Deep learning (DL) along with never-ending advancements in computational processing and cloud technologies have bestowed us powerful analyzing tools and techniques in the past decade and enabled us to use and apply them in various fields of…

Machine Learning · Computer Science 2023-02-23 Farzan Shenavarmasouleh , Farid Ghareh Mohammadi , Khaled M. Rasheed , Hamid R. Arabnia

The coronavirus disease 2019 (COVID-19) has led to a global pandemic of significant severity. In addition to its high level of contagiousness, COVID-19 can have a heterogeneous clinical course, ranging from asymptomatic carriers to severe…

Machine Learning · Computer Science 2023-07-03 Yuelyu Ji , Yuhe Gao , Runxue Bao , Qi Li , Disheng Liu , Yiming Sun , Ye Ye

The accurate prediction of B-cell epitopes is critical for guiding vaccine development against infectious diseases, including SARS and COVID-19. This study explores the use of a deep neural network (DNN) model to predict B-cell epitopes for…

Machine Learning · Computer Science 2024-12-03 Xinyu Shi , Yixin Tao , Shih-Chi Lin

Due to the characteristics of COVID-19, the epidemic develops rapidly and overwhelms health service systems worldwide. Many patients suffer from systemic life-threatening problems and need to be carefully monitored in ICUs. Thus the…

Machine Learning · Computer Science 2020-07-20 Liantao Ma , Xinyu Ma , Junyi Gao , Chaohe Zhang , Zhihao Yu , Xianfeng Jiao , Wenjie Ruan , Yasha Wang , Wen Tang , Jiangtao Wang