Related papers: Group Testing on General Set-Systems
The \emph{generalized sorting problem} is a restricted version of standard comparison sorting where we wish to sort $n$ elements but only a subset of pairs are allowed to be compared. Formally, there is some known graph $G = (V, E)$ on the…
In this paper, we consider the problem of designing optimal pooling matrix for group testing (for example, for COVID-19 virus testing) with the constraint that no more than $r>0$ samples can be pooled together, which we call "dilution…
Testing is recommended for all close contacts of confirmed COVID-19 patients. However, existing group testing methods are oblivious to the circumstances of contagion provided by contact tracing. Here, we build upon a well-known…
We consider two closely related problems: anomaly detection in sensor networks and testing for infections in human populations. In both problems, we have $n$ nodes (sensors, humans), and each node exhibits an event of interest (anomaly,…
We propose a novel infection spread model based on a random connection graph which represents connections between $n$ individuals. Infection spreads via connections between individuals and this results in a probabilistic cluster formation…
The goal of combinatorial group testing is to efficiently identify up to $d$ defective items in a large population of $n$ items, where $d \ll n$. Defective items satisfy certain properties while the remaining items in the population do not.…
In a group testing scheme, a set of tests is designed to identify a small number $t$ of defective items that are present among a large number $N$ of items. Each test takes as input a group of items and produces a binary output indicating…
We study the problem of learning a hidden hypergraph $G=(V,E)$ by making a single batch of queries (non-adaptively). We consider the hyperedge detection model, in which every query must be of the form: ``Does this set $S\subseteq V$ contain…
The group testing problem consists of determining a small set of defective items from a larger set of items based on a number of possibly-noisy tests, and is relevant in applications such as medical testing, communication protocols, pattern…
The problem of matching two sets of multiple elements, namely set-to-set matching, has received a great deal of attention in recent years. In particular, it has been reported that good experimental results can be obtained by preparing a…
The basic goal of threshold group testing is to identify up to $d$ defective items among a population of $n$ items, where $d$ is usually much smaller than $n$. The outcome of a test on a subset of items is positive if the subset has at…
Motivated by gene set enrichment analysis, we investigate the problem of combined hypothesis testing on a graph. We introduce a general framework to effectively use the structural information of the underlying graph when testing…
Consider a finite population of $N$ items, where item $i$ has a probability $p_i$ to be defective. The goal is to identify all items by means of group testing. This is the generalized group testing problem (hereafter GGTP). In the case of…
Repeated asymptomatic screening for SARS-CoV-2 promises to control spread of the virus but would require too many resources to implement at scale. Group testing is promising for screening more people with fewer test resources: multiple…
The conventional model of disjunctive group testing assumes that there are several defective elements (or defectives) among a large population, and a group test yields the positive response if and only if the testing group contains at least…
We examine the following version of a classic combinatorial search problem introduced by R\'enyi: Given a finite set $X$ of $n$ elements we want to identify an unknown subset $Y \subset X$ of exactly $d$ elements by testing, by as few as…
Motivated by testing for pathogenic diseases we consider a new nonadaptive group testing problem for which: (1) positives occur within a burst, capturing the fact that infected test subjects often come in clusters, and (2) that the test…
We consider the problem of identifying infected individuals in a population of size N. We introduce a group testing approach that uses significantly fewer than N tests when infection prevalence is low. The most common approach to group…
This paper proposes a novel generalization of group testing, called multi-group testing, which relaxes the notion of "testing subset" in group testing to "testing multi-set". The generalization aims to learn more information of each item to…
Combinatorial group testing (CGT) is used to identify defective items from a set of items by grouping them together and performing a small number of tests on the groups. Recently, group testing has been used to design efficient COVID-19…