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Our work is motivated by and illustrated with application of association networks in computational biology, specifically in the context of gene/protein regulatory networks. Association networks represent systems of interacting elements,…

Applications · Statistics 2012-05-01 Natallia Katenka , Eric D. Kolaczyk

We derive a message passing method for computing the spectra of locally tree-like networks and an approximation to it that allows us to compute closed-form expressions or fast numerical approximates for the spectral density of random graphs…

Physics and Society · Physics 2019-04-19 M. E. J. Newman , Xiao Zhang , Raj Rao Nadakuditi

Discrimination between objects, in particular quantum states, is one of the most fundamental tasks in (quantum) information theory. Recent years have seen significant progress towards extending the framework to point-to-point quantum…

Quantum Physics · Physics 2023-07-26 Christoph Hirche

Quantum networks providing shared entanglement over a mesh of quantum nodes will revolutionize the field of quantum information science by offering novel applications in quantum computation, enhanced precision in networks of sensors and…

Quantum Physics · Physics 2023-09-19 Jacob P. Covey , Harald Weinfurter , Hannes Bernien

This article serves as an introduction to the study of networks of social systems. First, we introduce the reader to key mathematical tools to study social networks, including mathematical representations of networks and essential…

Physics and Society · Physics 2023-02-03 Heather Z. Brooks

Multilayer network science has emerged as a central framework for analysing interconnected and interdependent complex systems. Its relevance has grown substantially with the increasing availability of rich, heterogeneous data, which makes…

Recent advances in scanning transmission electron and scanning probe microscopies have opened exciting opportunities in probing the materials structural parameters and various functional properties in real space with angstrom-level…

Link prediction is one of the fundamental problems in network analysis. In many applications, notably in genetics, a partially observed network may not contain any negative examples of absent edges, which creates a difficulty for many…

Machine Learning · Statistics 2013-01-30 Yunpeng Zhao , Elizaveta Levina , Ji Zhu

In this work we present a general mathematical framework to deal with Quantum Networks, i.e. networks resulting from the interconnection of elementary quantum circuits. The cornerstone of our approach is a generalization of the Choi…

Quantum Physics · Physics 2016-01-20 Alessandro Bisio , Giulio Chiribella , Giacomo Mauro D'Ariano , Paolo Perinotti

Quantum communication is a growing area of research, with quantum internet being one of the most promising applications. Studying the statistical properties of this network is essential to understanding its connectivity and the efficiency…

Reaction networks are a general formalism for describing collections of classical entities interacting in a random way. While reaction networks are mainly studied by chemists, they are equivalent to Petri nets, which are used for similar…

Mathematical Physics · Physics 2021-11-23 John C. Baez

The network of interactions among fluid elements and coherent structures gives rise to the incredibly rich dynamics of vortical flows. These interactions can be described with the use of mathematical tools from the emerging field of network…

Fluid Dynamics · Physics 2021-11-16 Kunihiko Taira , Aditya G. Nair

The recent discovery of universal principles underlying many complex networks occurring across a wide range of length scales in the biological world has spurred physicists in trying to understand such features using techniques from…

Biological Physics · Physics 2015-05-13 Sitabhra Sinha

Adaptive networks are a novel class of dynamical networks whose topologies and states coevolve. Many real-world complex systems can be modeled as adaptive networks, including social networks, transportation networks, neural networks and…

Social and Information Networks · Computer Science 2017-05-29 Hiroki Sayama , Irene Pestov , Jeffrey Schmidt , Benjamin James Bush , Chun Wong , Junichi Yamanoi , Thilo Gross

We present a simple model of network dynamics that can be solved analytically for uniform networks. We obtain the dynamics of response of the system to perturbations. The analytical solution is an excellent approximation for random…

Cellular Automata and Lattice Gases · Physics 2009-11-11 M. A. M. de Aguiar , Irving R. Epstein , Yaneer Bar-Yam

The fundamental concept of applying the system methodology to network analysis declares that network architecture should take into account services and applications which this network provides and supports. This work introduces a formal…

Networking and Internet Architecture · Computer Science 2015-09-03 Andrey A. Shchurov

We propose a new method to recover global information about a network of interconnected dynamical systems based on observations made at a small number (possibly one) of its nodes. In contrast to classical identification of full graph…

Dynamical Systems · Mathematics 2016-10-18 A. Mauroy , J. Hendrickx

The formalism of quantum theory over discrete systems is extended in two significant ways. First, quantum evolutions are generalized to act over entire network configurations, so that nodes may find themselves in a quantum superposition of…

Quantum Physics · Physics 2024-10-30 Pablo Arrighi , Amélia Durbec , Matt Wilson

Due to the complexity of the human body, most diseases present a high inter-personal variability in the way they manifest, i.e. in their phenotype, which has important clinical repercussions - as for instance the difficulty in defining…

Physics and Society · Physics 2018-06-06 Massimiliano Zanin , Juan Manuel Tuñas , Ernestina Menasalvas

Networks are a useful representation for data on connections between units of interests, but the observed connections are often noisy and/or include missing values. One common approach to network analysis is to treat the network as a…

Methodology · Statistics 2017-05-22 Yun-Jhong Wu , Elizaveta Levina , Ji Zhu
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