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Multiscale and inhomogeneous molecular systems are challenging topics in the field of molecular simulation. In particular, modeling biological systems in the context of multiscale simulations and exploring material properties are driving a…

Computational Physics · Physics 2017-12-06 Horacio V. Guzman , Christoph Junghans , Kurt Kremer , Torsten Stuehn

As quantum computing technology advances, the complexity of quantum algorithms increases, necessitating a shift from low-level circuit descriptions to high-level programming paradigms. This paper addresses the challenges of developing a…

Quantum Physics · Physics 2025-03-04 Israel Reichental , Ravid Alon , Lior Preminger , Matan Vax , Amir Naveh

The Simplex tableau has been broadly used and investigated in the industry and academia. With the advent of the big data era, ever larger problems are posed to be solved in ever larger machines whose architecture type did not exist in the…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-29 Demetrios Coutinho , Felipe O. Lins e Silva , Daniel Aloise , Samuel , Xavier-de-Souza

The most efficient algorithms for finding maximum independent sets in both theory and practice use reduction rules to obtain a much smaller problem instance called a kernel. The kernel can then be solved quickly using exact or heuristic…

Data Structures and Algorithms · Computer Science 2019-09-11 Demian Hespe , Christian Schulz , Darren Strash

Computational chemistry allows researchers to experiment in sillico: by running a computer simulations of a biological or chemical processes of interest. Molecular dynamics with molecular mechanics model of interactions simulates N-body…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-03-03 Jana Pazúriková

As quantum computers continue to improve and support larger, more complex computations, smart control hardware and compilers are needed to efficiently leverage the capabilities of these systems. This paper introduces a novel approach to…

Quantum Physics · Physics 2025-11-19 Folkert de Ronde , Alexander Knapen , Stephan Wong , Sebastian Feld

The purpose of this work is to study mortar methods for linear elasticity using standard low order finite element spaces. Based on residual stabilization, we introduce a stabilized mortar method for linear elasticity and compare it to the…

Numerical Analysis · Mathematics 2022-12-28 Tom Gustafsson , Peter Råback , Juha Videman

Sparse matrix-vector and matrix-matrix multiplication (SpMV and SpMM) are fundamental in both conventional (graph analytics, scientific computing) and emerging (sparse DNN, GNN) domains. Workload-balancing and parallel-reduction are…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-15 Guyue Huang , Guohao Dai , Yu Wang , Yufei Ding , Yuan Xie

Developing efficient hardware accelerators for mathematical kernels used in scientific applications and machine learning has traditionally been a labor-intensive task. These accelerators typically require low-level programming in Verilog or…

Hardware Architecture · Computer Science 2025-09-15 Doru Thom Popovici , Mario Vega , Angelos Ioannou , Fabien Chaix , Dania Mosuli , Blair Reasoner , Tan Nguyen , Xiaokun Yang , John Shalf

Modern supercomputers allow the simulation of complex phenomena with increased accuracy. Eventually, this requires finer geometric discretizations with larger numbers of mesh elements. In this context, and extrapolating to the Exascale…

Computational Physics · Physics 2020-07-08 Ricard Borrell , Guillermo Oyarzun , Damien Dosimont , Guillaume Houzeaux

Accurate and efficient implementation of parallel quantum gates is crucial for scalable quantum information processing. However, the unavoidable crosstalk between qubits in current noisy processors impedes the achievement of high gate…

Quantum Physics · Physics 2026-01-06 Xiaodong Yang , Ran Liu , Jun Li

The ability to model, analyze, and predict execution time of computations is an important building block supporting numerous efforts, such as load balancing, performance optimization, and automated performance tuning for high performance,…

Performance · Computer Science 2020-06-22 James D. Stevens , Andreas Klöckner

The acceleration of sparse matrix computations on modern many-core processors, such as the graphics processing units (GPUs), has been recognized and studied over a decade. Significant performance enhancements have been achieved for many…

Mathematical Software · Computer Science 2017-10-16 Ruipeng Li

Maximal Clique Enumeration (MCE) is a fundamental graph mining problem, and is useful as a primitive in identifying dense structures in a graph. Due to the high computational cost of MCE, parallel methods are imperative for dealing with…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-31 Apurba Das , Seyed-Vahid Sanei-Mehri , Srikanta Tirthapura

In many applications, thin shell-like structures are integrated within or attached to volumetric bodies. This includes reinforcements placed in soft matrix material in lightweight structure design, or hollow structures that are partially or…

Numerical Analysis · Mathematics 2025-01-10 Astrid Pechstein , Michael Neunteufel

As inelastic structures are ubiquitous in many engineering fields, a central task in computational mechanics is to develop accurate, robust and efficient tools for their analysis. Motivated by the poor performances exhibited by standard…

Numerical Analysis · Mathematics 2018-09-21 Nicola A. Nodargi

We introduce an adaptable and modular hybrid architecture designed for fault-tolerant quantum computing. It combines quantum emitters and linear-optical entangling gates to leverage the strength of both matter-based and photonic-based…

Anisotropic mesh adaptation is a powerful way to directly minimise the computational cost of mesh based simulation. It is particularly important for multi-scale problems where the required number of floating-point operations can be reduced…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-08-13 Georgios Rokos , Gerard J. Gorman , James Southern , Paul H. J. Kelly

Finding coarse representations of large graphs is an important computational problem in the fields of scientific computing, large scale graph partitioning, and the reduction of geometric meshes. Of particular interest in all of these fields…

Discrete Mathematics · Computer Science 2022-04-26 Christopher Brissette , Andy Huang , George Slota

We present efficient algorithms to build data structures and the lists needed for fast multipole methods. The algorithms are capable of being efficiently implemented on both serial, data parallel GPU and on distributed architectures. With…

Mathematical Software · Computer Science 2013-01-10 Qi Hu , Nail A. Gumerov , Ramani Duraiswami
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