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Research resources (RRs) such as data, software, and tools are essential pillars of scientific research. The field of biomedicine, a critical scientific discipline, is witnessing a surge in research publications resulting in the…
We present a system that allows life-science researchers to search a linguistically annotated corpus of scientific texts using patterns over dependency graphs, as well as using patterns over token sequences and a powerful variant of boolean…
Extracting biographical information from online documents is a popular research topic among the information extraction (IE) community. Various natural language processing (NLP) techniques such as text classification, text summarisation and…
Scientists have always used the studies and research of other researchers to achieve new objectives and perspectives. In particular, employing and operating the measured data in previous studies is so practical. Searching the content of…
The Linked Open Data practice has led to a significant growth of structured data on the Web in the last decade. Such structured data describe real-world entities in a machine-readable way, and have created an unprecedented opportunity for…
The search for similar genetic sequences is one of the main bioinformatics tasks. The genetic sequences data banks are growing exponentially and the searching techniques that use linear time are not capable to do the search in the required…
Semi-structured documents integrate diverse interleaved data elements (e.g., tables, charts, hierarchical paragraphs) arranged in various and often irregular layouts. These documents are widely observed across domains and account for a…
This research introduces an innovative approach to explore the cognitive and biologically inspired underpinnings of feature vector splitting for analyzing the significance of different attributes in e-security biometric signature…
Synthetic Biology is the new engineering-based approach to biology that includes applications of designing complex biological devices. At present, it is not yet clear what will emerge as the defining principles of Synthetic Biology. One…
Many real world systems need to operate on heterogeneous information networks that consist of numerous interacting components of different types. Examples include systems that perform data analysis on biological information networks; social…
Documentation is one of the most neglected activities in Software Engineering, although it is an important method of assuring quality and understanding. Bioinformatics software is generally written by researchers from fields other than…
Scientific research is highly structured and some of that structure is reflected in research reports. Traditional scientific research reports are yielding to interactive documents which expose their internal structure and are richly linked…
Graph simulation (using graph schemata or data guides) has been successfully proposed as a technique for adding structure to semistructured data. Design patterns for description (such as meta-classes and homomorphisms between schema…
Questions of understanding and quantifying the representation and amount of information in organisms have become a central part of biological research, as they potentially hold the key to fundamental advances. In this paper, we demonstrate…
Web services are accessed via query interfaces which hide databases containing thousands of relevant information. User's side, distant database is a black box which accepts query and returns results, there is no way to access database…
In this paper, we survey various user-centered or context-based biomedical health information retrieval systems. We present and discuss the performance of systems submitted in CLEF eHealth 2014 Task 3 for this purpose. We classify and focus…
The tremendous expanse of search engines, dictionary and thesaurus storage, and other text mining applications, combined with the popularity of readily available scanning devices and optical character recognition tools, has necessitated…
In this work, a new indexing technique of data streams called BSTree is proposed. This technique uses the method of data discretization, SAX [4], to reduce online the dimensionality of data streams. It draws on Btree to build the index and…
Efficiency has been a pivotal aspect of the software industry since its inception, as a system that serves the end-user fast, and the service provider cost-efficiently benefits all parties. A database management system (DBMS) is an integral…
At the very beginning of compiling a bibliography, usually only basic information, such as title, authors and publication date of an item are known. In order to gather additional information about a specific item, one typically has to…