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The diffusion of molecules in complex intracellular environments can be strongly influenced by spatial heterogeneity and stochasticity. A key challenge when modelling such processes using stochastic random walk frameworks is that negative…

Biological Physics · Physics 2019-01-31 Elliot J. Carr , Matthew J. Simpson

A model for the development of turbulent shear flows, created by non-uniform parallel flows in a confining channel, is used to identify the diffuser shape that maximises pressure recovery when the inflow is non-uniform. Wide diffuser angles…

Fluid Dynamics · Physics 2018-04-09 GP Benham , IJ Hewitt , CP Please , P Bird

Intra-body nanonetworks hold promise for advancing targeted drug delivery (TDD) systems through molecular communications (MC). In the baseline MC-TDD system, drug-loaded nanomachines (DgNs) are positioned near the infected tissues to…

Emerging Technologies · Computer Science 2024-09-30 Ethungshan Shitiri , Akarsh Yadav , Sergi Abadal , Eduard Alarcón , Ho-Shin Cho

The goal of this paper is to develop and analyze some fully discrete finite element methods for a displacement-pressure model modeling swelling dynamics of polymer gels under mechanical constraints. In the model, the swelling dynamics is…

Numerical Analysis · Mathematics 2009-03-25 Xiaobing Feng , Yinnian He

We introduce a microscopically realistic model of a physical gel and use computer simulations to study its static and dynamic properties at thermal equilibrium. The phase diagram comprises a sol phase, a coexistence region ending at a…

Soft Condensed Matter · Physics 2015-06-25 Pablo I. Hurtado , Ludovic Berthier , Walter Kob

Thermo-responsive hydrogels are smart materials that rapidly switch between hydrophilic (swollen) and hydrophobic (shrunken) states when heated past a threshold temperature, resulting in order-of-magnitude changes in gel volume. Modelling…

Fluid Dynamics · Physics 2025-05-14 Joseph J. Webber , Thomas D. Montenegro-Johnson

Current-day data centers and high-volume cloud services employ a broad set of heterogeneous servers. In such settings, client requests typically arrive at multiple entry points, and dispatching them to servers is an urgent distributed…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-27 Guy Goren , Shay Vargaftik , Yoram Moses

The paper addresses an optimal control problem for a perturbed sweeping process of the rate-independent hysteresis type described by a controlled "play and stop" operator with separately controlled perturbations. This problem can be reduced…

Optimization and Control · Mathematics 2015-12-01 Tan H. Cao , Boris S. Mordukhovich

In order to increase the efficiency of the computer simulation of biological molecules, it is very common to impose holonomic constraints on the fastest degrees of freedom; normally bond lengths, but also possibly bond angles. However, as…

Chemical Physics · Physics 2011-12-19 Pablo Echenique , Claudio N. Cavasotto , Pablo García-Risueño

Although optimal control theory has been used for the theoretical study of anti-cancerous drugs scheduling optimization, with the aim of reducing the primary tumor volume, the effect on metastases is often ignored. Here, we use a previously…

Tissues and Organs · Quantitative Biology 2013-06-21 Sebastien Benzekry , Philip Hahnfeldt

Molecular communications is a promising framework for the design of controlled-release drug delivery systems. Under this framework, drug carriers, diseased cells, and the channel are modeled as transmitters, absorbing receivers, and…

Water evaporation is critically important for hydrogels in open-air applications, but theoretically modeling is difficult due to the complicated intermolecular interactions and sustained deformation. In this work, we construct a simplified…

Soft Condensed Matter · Physics 2025-05-28 Zehua Yu , Yongshun Ren , Kang Liu

Much of the progress achieved in understanding plasticity and failure in amorphous solids had been achieved using experiments and simulations in which the materials were loaded using strain control. There is paucity of results under stress…

Statistical Mechanics · Physics 2015-06-19 Vladimir Dailidonis , Valery Ilyin , Pankaj Mishra , Itamar Procaccia

We present a novel dynamic light scattering setup to probe, with time and space resolution, the microscopic dynamics of soft matter systems confined within millimeter-sized spherical drops. By using an ad-hoc optical layout, we tackle the…

Soft Condensed Matter · Physics 2024-02-16 Matteo Milani , Ty Phou , Guillame Prevot , Laurence Ramos , Luca Cipelletti

Probing dynamic and static correlation in glass-forming supercooled liquids has been a challenge for decades in spite of extensive research. Dynamic correlation which manifests itself as Dynamic Heterogeneity is ubiquitous in a vast variety…

Statistical Mechanics · Physics 2021-09-22 Anoop Mutneja , Smarajit Karmakar

Predicting particle segregation has remained challenging due to the lack of a general model for the segregation velocity that is applicable across a range of granular flow geometries. Here, a segregation velocity model for dense granular…

Soft Condensed Matter · Physics 2025-10-22 Yifei Duan , Lu Jing , Paul B. Umbanhowar , Julio M. Ottino , Richard M. Lueptow

The release of a gas limited by surface desorption, or by diffusion from the bulk of spherical pebbles is revisited. A method is proposed to identify the release limiting process, by comparing a partial temperature ramp, up to slightly…

Other Condensed Matter · Physics 2009-11-13 Ricardo E. Avila

In the past decade, Artificial Intelligence driven drug design and discovery has been a hot research topic, where an important branch is molecule generation by generative models, from GAN-based models and VAE-based models to the latest…

Biomolecules · Quantitative Biology 2023-10-10 Siyuan Guo , Jihong Guan , Shuigeng Zhou

A lubrication model describes the dynamics of a thin layer of fluid spreading over a solid substrate. But to make forecasts we need to supply correct initial conditions to the model. Remarkably, the initial fluid thickness is not the…

chao-dyn · Physics 2007-05-23 S. A. Suslov , A. J. Roberts

The paper is devoted to deriving necessary optimality conditions in a general optimal control problem for dynamical systems governed by controlled sweeping processes with hard-constrained control actions entering both polyhedral moving sets…

Optimization and Control · Mathematics 2021-03-17 Tan H. Cao , Giovanni Colombo , Boris S. Mordukhovich , Dao Nguyen