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The controllable generation of diffusion models aims to steer the model to generate samples that optimize some given objective functions. It is desirable for a variety of applications including image generation, molecule generation, and…

Machine Learning · Computer Science 2025-05-29 Owen Oertell , Shikun Sun , Yiding Chen , Jin Peng Zhou , Zhiyong Wang , Wen Sun

Deciphering the control principles of metabolism and its interaction with other cellular functions is central to biomedicine and biotechnology. Yet, understanding the efficient control of metabolic fluxes remains elusive for large-scale…

Molecular Networks · Quantitative Biology 2015-09-04 Georg Basler , Zoran Nikoloski , Abdelhalim Larhlimi , Albert-László Barabási , Yang-Yu Liu

Epidemic control frequently relies on adjusting interventions based on prevalence. But designing such policies is a highly non-trivial problem due to uncertain intervention effects, costs and the difficulty of quantifying key transmission…

Populations and Evolution · Quantitative Biology 2025-09-16 Giovanni Pugliese Carratelli , Xiaodong Cheng , Kris V. Parag , Ioannis Lestas

We consider the problem of controlling the propagation of an epidemic outbreak in an arbitrary contact network by distributing vaccination resources throughout the network. We analyze a networked version of the…

Social and Information Networks · Computer Science 2013-03-19 Victor M. Preciado , Michael Zargham , Chinwendu Enyioha , Ali Jadbabaie , George Pappas

In this paper, we analyze the quality of a large class of simple dynamic resource allocation (DRA) strategies which we name priority planning. Their aim is to control an undesired diffusion process by distributing resources to the…

Optimization and Control · Mathematics 2014-07-18 Kevin Scaman , Argyris Kalogeratos , Nicolas Vayatis

The time-dependent reproduction number Rt can be used to track pathogen transmission and to assess the efficacy of interventions. This quantity can be estimated by fitting renewal equation models to time series of infectious disease case…

Populations and Evolution · Quantitative Biology 2025-01-30 Ioana Bouros , Robin Thompson , David Gavaghan , Ben Lambert

In this paper, we consider reaction-diffusion epidemic models with mass action or standard incidence mechanism and study the impact of limiting population movement on disease transmissions. We set either the dispersal rate of the…

Analysis of PDEs · Mathematics 2023-12-19 Rachidi Salako , Yixiang Wu

A simplified SIS reaction-diffusion-advection model is proposed and investigated to understand the impact of spatial heterogeneity of environment and advection on the persistence and eradication of an infectious disease. The free boundary…

Analysis of PDEs · Mathematics 2015-05-26 Jing Ge , Kwang Ik Kim , Zhigui Lin , Huaiping Zhu

The networked structure of contacts shapes the spreading of epidemic processes. Recent advances on network theory have improved our understanding of the epidemic processes at large scale. The relevance of several considerations still needs…

Physics and Society · Physics 2019-02-21 Sergio Gómez , Alberto Fernández , Sandro Meloni , Alex Arenas

We study the effectiveness of recovery strategies for a dynamic model of failure spreading in networks. These strategies control the distribution of resources based on information about the current network state and network topology. In…

Physics and Society · Physics 2009-11-13 Lubos Buzna , Karsten Peters , Hendrik Ammoser , Christian Kuehnert , Dirk Helbing

Motivated by a problem in heterogeneous catalysis, we study a model for irreversible first-order reactions in which gas transport occurs only by diffusion, and reaction occurs only at a small number of well-localized sites. The main problem…

Probability · Mathematics 2015-10-06 Renato Feres , Matt Wallace

Efficient allocation of limited medical resources is crucial for controlling epidemic spreading on networks. Based on the susceptible-infected-susceptible model, we solve an optimization problem as how best to allocate the limited resources…

Populations and Evolution · Quantitative Biology 2017-08-02 Hanshuang Chen , Guofeng Li , Haifeng Zhang , Zhonghuai Hou

We study a general epidemic model with arbitrary recovery rate distributions. This simple deviation from the standard setup is sufficient to prove that heterogeneity in the dynamical parameters can be as important as the more studied…

Physics and Society · Physics 2020-01-22 Guilherme Ferraz de Arruda , Giovanni Petri , Francisco A. Rodrigues , Yamir Moreno

Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor…

Molecular Networks · Quantitative Biology 2014-12-23 Jason Shulman , Frank Malatino , Alexander Mo , Killian Ryan , Gemunu H. Gunaratne

In the present paper, we are concerned with an SIS epidemic reaction-diffusion model governed by mass action infection mechanism and linear birth-death growth with no flux boundary condition. By performing qualitative analysis, we study the…

Analysis of PDEs · Mathematics 2018-07-11 Huicong Li , Rui Peng , Zhi-An Wang

Network--based epidemic models that account for heterogeneous contact patterns are extensively used to predict and control the diffusion of infectious diseases. We use census and survey data to reconstruct a geo--referenced and…

Social and Information Networks · Computer Science 2026-05-19 Alessandro Celestini , Francesca Colaiori , Stefano Guarino , Enrico Mastrostefano , Lena Rebecca Zastrow

Infectious disease modeling is used to forecast epidemics and assess the effectiveness of intervention strategies. Although the core assumption of mass-action models of homogeneously mixed population is often implausible, they are…

Physics and Society · Physics 2024-08-29 Thien-Minh Le , Jukka-Pekka Onnela

Inference-time control of diffusion models aims to steer model outputs to satisfy new constraints without retraining. Previous approaches have mostly relied on heuristic guidance or have been coupled with Sequential Monte Carlo (SMC) for…

Optimal control of interdependent epidemics spreading over complex networks is a critical issue. We first establish a framework to capture the coupling between two epidemics, and then analyze the system's equilibrium states by categorizing…

Systems and Control · Computer Science 2017-10-19 Juntao Chen , Rui Zhang , Quanyan Zhu

We investigate the role of migration patterns on the spread of epidemics in complex networks. We enhance the SIS-diffusion model on metapopulations to a nonlinear diffusion. Specifically, individuals move randomly over the network but at a…

Populations and Evolution · Quantitative Biology 2026-04-16 Jordi Ripoll , Albert Avinyó , Marta Pellicer , Joan Saldaña