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Classification in the sense of similarity is an important issue. In this paper, we study similarity classification in Topological Data Analysis. We define a pseudometric $d_{S}^{(p)}$ to measure the distance between barcodes generated by…

Algebraic Topology · Mathematics 2024-11-18 Jiaxing He , Bingzhe Hou , Tieru Wu , Yang Cao

We introduce an innovative, data-driven topological data analysis (TDA) technique for estimating the state spaces of dynamically changing functional human brain networks at rest. Our method utilizes the Wasserstein distance to measure…

Algebraic Topology · Mathematics 2024-04-18 Moo K. Chung , Shih-Gu Huang , Ian C. Carroll , Vince D. Calhoun , H. Hill Goldsmith

Graphical models are frequently used to represent topological structures of various complex networks. Current criteria to assess different models of a network mainly rely on how close a model matches the network in terms of topological…

Networking and Internet Architecture · Computer Science 2015-03-17 Zhengping Fan , Guanrong Chen , Yunong Zhang

Revealing the structural features of a complex system from the observed collective dynamics is a fundamental problem in network science. In order to compute the various topological descriptors commonly used to characterize the structure of…

Data Analysis, Statistics and Probability · Physics 2021-02-16 Sebastian Raimondo , Manlio De Domenico

Complex networks, which are the abstractions of many real-world systems, present a persistent challenge across disciplines for people to decipher their underlying information. Recently, hyperbolic geometry of latent spaces has gained…

Social and Information Networks · Computer Science 2024-05-28 Kai Zheng , Qilong Feng , Yaohang Li , Qichang Zhao , Jinhui Xu , Jianxin Wang

The topological information of a network can be retrieved equivalently from its complement consisting of the same nodes but complementary edges. Hence the partition of a network into certain substructures based on given criteria should be…

Physics and Society · Physics 2009-08-07 Jiao Wang , C. -H. Lai

We propose a new \cu{class-optimal} algorithm for the distributed computation of Wasserstein Barycenters over networks. Assuming that each node in a graph has a probability distribution, we prove that every node can reach the barycenter of…

Optimization and Control · Mathematics 2018-09-24 César A. Uribe , Darina Dvinskikh , Pavel Dvurechensky , Alexander Gasnikov , Angelia Nedić

We use topological data analysis to study "functional networks" that we construct from time-series data from both experimental and synthetic sources. We use persistent homology with a weight rank clique filtration to gain insights into…

Quantitative Methods · Quantitative Biology 2017-05-24 Bernadette J. Stolz , Heather A. Harrington , Mason A. Porter

Many online networks are measured and studied via sampling techniques, which typically collect a relatively small fraction of nodes and their associated edges. Past work in this area has primarily focused on obtaining a representative…

Social and Information Networks · Computer Science 2011-05-30 Maciej Kurant , Minas Gjoka , Yan Wang , Zack W. Almquist , Carter T. Butts , Athina Markopoulou

There has been a lot of interest in developing algorithms to extract clusters or communities from networks. This work proposes a method, based on blockmodelling, for leveraging communities and other topological features for use in a…

Social and Information Networks · Computer Science 2011-10-20 Leto Peel

Persistent Homology is a powerful tool in Topological Data Analysis (TDA) to capture topological properties of data succinctly at different spatial resolutions. For graphical data, shape, and structure of the neighborhood of individual data…

Social and Information Networks · Computer Science 2018-11-12 Sumit Bhatia , Bapi Chatterjee , Deepak Nathani , Manohar Kaul

Metro networks serve as good examples of traffic systems for understanding the relations between geometric structures and transport properties.We study and compare 28 world major metro networks in terms of the Wasserstein distance, the key…

Physics and Society · Physics 2014-04-15 Wei Li , Jiao Gu , Shiping Liu , Yueying Zhu , Shengfeng Deng , Longfeng Zhao , Jihui Han , Xu Cai

One major open problem in network coding is to characterize the capacity region of a general multi-source multi-demand network. There are some existing computational tools for bounding the capacity of general networks, but their…

Information Theory · Computer Science 2015-03-17 Michelle Effros , Tracey Ho , Shirin Jalali

We present a novel method to explicitly incorporate topological prior knowledge into deep learning based segmentation, which is, to our knowledge, the first work to do so. Our method uses the concept of persistent homology, a tool from…

Computer Vision and Pattern Recognition · Computer Science 2019-01-30 James R. Clough , Ilkay Oksuz , Nicholas Byrne , Julia A. Schnabel , Andrew P. King

This paper presents an efficient algorithm for the progressive approximation of Wasserstein barycenters of persistence diagrams, with applications to the visual analysis of ensemble data. Given a set of scalar fields, our approach enables…

Graphics · Computer Science 2019-10-10 Jules Vidal , Joseph Budin , Julien Tierny

We consider the problem of generating hypothesis from data based on ideas from logic. We introduce a notion of barcodes, which we call sequent barcodes, that mirrors the barcodes in persistent homology theory in topological data analysis.…

Algebraic Topology · Mathematics 2022-08-03 Saugata Basu , Negin Karisani , Laxmi Parida

This work introduces a number of algebraic topology approaches, such as multicomponent persistent homology, multi-level persistent homology and electrostatic persistence for the representation, characterization, and description of small…

Quantitative Methods · Quantitative Biology 2018-02-07 Zixuan Cang , Lin Mu , Guowei Wei

Neural network training is commonly based on SGD. However, the understanding of SGD's ability to converge to good local minima, given the non-convex nature of loss functions and the intricate geometric characteristics of loss landscapes,…

We consider a crucial aspect of self-organization of a sensor network consisting of a large set of simple sensor nodes with no location hardware and only very limited communication range. After having been distributed randomly in a given…

Data Structures and Algorithms · Computer Science 2007-05-23 Sandor P. Fekete , Alexander Kroeller , Dennis Pfisterer , Stefan Fischer , Carsten Buschmann

Optimal transport distances, otherwise known as Wasserstein distances, have recently drawn ample attention in computer vision and machine learning as a powerful discrepancy measure for probability distributions. The recent developments on…

Machine Learning · Computer Science 2015-11-11 Soheil Kolouri , Yang Zou , Gustavo K. Rohde
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