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Latent representations of drugs and their targets produced by contemporary graph autoencoder models have proved useful in predicting many types of node-pair interactions on large networks, including drug-drug, drug-target, and target-target…

Machine Learning · Computer Science 2023-02-20 Nhat Khang Ngo , Truong Son Hy , Risi Kondor

Reliable modal identification from output-only vibration data remains a challenging problem under measurement noise, sparse sensing, and structural variability. These challenges intensify when global modal quantities and spatially…

Computational Engineering, Finance, and Science · Computer Science 2026-04-14 Bhargav Nath , Mehulkumar Lakhadive , Anshu Sharma , Basuraj Bhowmik

In the real world, networks often contain multiple relationships among nodes, manifested as the heterogeneity of the edges in the networks. We convert the heterogeneous networks into multiple views by using each view to describe a specific…

Social and Information Networks · Computer Science 2021-03-15 Lu Wang , Yu Song , Hong Huang , Fanghua Ye , Xuanhua Shi , Hai Jin

Multi-agent coordination is crucial for reliable multi-robot navigation in shared spaces such as automated warehouses. In regions of dense robot traffic, local coordination methods may fail to find a deadlock-free solution. In these…

Robotics · Computer Science 2025-03-06 Yue Meng , Nathalie Majcherczyk , Wenliang Liu , Scott Kiesel , Chuchu Fan , Federico Pecora

Graph Neural Networks (GNNs) are important across different domains, such as social network analysis and recommendation systems, due to their ability to model complex relational data. This paper introduces subgraph queries as a new task for…

Machine Learning · Computer Science 2024-08-09 Erfaneh Mahmoudzadeh , Parmis Naddaf , Kiarash Zahirnia , Oliver Schulte

This paper introduces a refined graph encoder embedding method, enhancing the original graph encoder embedding through linear transformation, self-training, and hidden community recovery within observed communities. We provide the…

Social and Information Networks · Computer Science 2025-03-18 Cencheng Shen , Jonathan Larson , Ha Trinh , Carey E. Priebe

Gaussian Process (GP) Variational Autoencoders (VAEs) extend standard VAEs by replacing the fully factorised Gaussian prior with a GP prior, thereby capturing richer correlations among latent variables. However, performing exact GP…

Machine Learning · Computer Science 2025-08-18 Xinxing Shi , Xiaoyu Jiang , Mauricio A. Álvarez

Variational Autoencoder (VAE)-based generative models offer flexible representation learning by incorporating meta-priors, general premises considered beneficial for downstream tasks. However, the incorporated meta-priors often involve…

Machine Learning · Computer Science 2023-02-27 Nao Nakagawa , Ren Togo , Takahiro Ogawa , Miki Haseyama

This paper aims to conduct a comparative analysis of contemporary Variational Autoencoder (VAE) architectures employed in anomaly detection, elucidating their performance and behavioral characteristics within this specific task. The…

Computer Vision and Pattern Recognition · Computer Science 2024-08-27 Huy Hoang Nguyen , Cuong Nhat Nguyen , Xuan Tung Dao , Quoc Trung Duong , Dzung Pham Thi Kim , Minh-Tan Pham

Graph autoencoders (GAEs), as a kind of generative self-supervised learning approach, have shown great potential in recent years. GAEs typically rely on distance-based criteria, such as mean-square-error (MSE), to reconstruct the input…

Machine Learning · Computer Science 2024-06-26 Ge Chen , Yulan Hu , Sheng Ouyang , Yong Liu , Cuicui Luo

Graph neural networks (GNNs) achieve remarkable performance for tasks on graph data. However, recent works show they are extremely vulnerable to adversarial structural perturbations, making their outcomes unreliable. In this paper, we…

Machine Learning · Computer Science 2020-06-17 Ao Zhang , Jinwen Ma

Self-supervised learning with masked autoencoders has recently gained popularity for its ability to produce effective image or textual representations, which can be applied to various downstream tasks without retraining. However, we observe…

Machine Learning · Computer Science 2023-08-21 Yucheng Shi , Yushun Dong , Qiaoyu Tan , Jundong Li , Ninghao Liu

As one of the most popular generative models, Variational Autoencoder (VAE) approximates the posterior of latent variables based on amortized variational inference. However, when the decoder network is sufficiently expressive, VAE may lead…

Machine Learning · Computer Science 2021-10-26 Dazhong Shen , Chuan Qin , Chao Wang , Hengshu Zhu , Enhong Chen , Hui Xiong

To address the lack of public power system data for machine learning research in energy networks, we investigate the use of variational graph autoencoders (VGAEs) for synthetic distribution grid generation. Using two open-source datasets,…

Machine Learning · Computer Science 2025-12-02 Syed Zain Abbas , Ehimare Okoyomon

Graph self-supervised learning has gained significant attention recently. However, many existing approaches heavily depend on perturbations, and inappropriate perturbations may corrupt the graph's inherent information. The Vector Quantized…

Machine Learning · Computer Science 2025-04-18 Long Zeng , Jianxiang Yu , Jiapeng Zhu , Qingsong Zhong , Xiang Li

Accumulated clinical studies show that microbes living in humans interact closely with human hosts, and get involved in modulating drug efficacy and drug toxicity. Microbes have become novel targets for the development of antibacterial…

Quantitative Methods · Quantitative Biology 2021-08-16 Lei Deng , Yibiao Huang , Xuejun Liu , Hui Liu

The task of concept prerequisite chain learning is to automatically determine the existence of prerequisite relationships among concept pairs. In this paper, we frame learning prerequisite relationships among concepts as an unsupervised…

Computation and Language · Computer Science 2020-04-23 Irene Li , Alexander Fabbri , Swapnil Hingmire , Dragomir Radev

Autoencoders based on Graph Neural Networks (GNNs) have garnered significant attention in recent years for their ability to extract informative latent representations, characterizing the structure of complex topologies, such as graphs.…

Recent advancements in graph neural networks (GNNs) for link prediction have introduced sophisticated training techniques and model architectures. However, reliance on outdated baselines may exaggerate the benefits of these new approaches.…

Machine Learning · Computer Science 2025-08-29 Weishuo Ma , Yanbo Wang , Xiyuan Wang , Muhan Zhang

In this paper, we propose Multiresolution Equivariant Graph Variational Autoencoders (MGVAE), the first hierarchical generative model to learn and generate graphs in a multiresolution and equivariant manner. At each resolution level, MGVAE…

Machine Learning · Computer Science 2022-06-30 Truong Son Hy , Risi Kondor
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