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We introduce a random bit-string model of post-transcriptional genetic regulation based on sequence matching. The model spontaneously yields a scale free network with power law scaling with $ \gamma=-1$ and also exhibits log-periodic…

Genomics · Quantitative Biology 2009-11-10 Duygu Balcan , Ayse Erzan

It is generally accepted that scale-free networks is prone to epidemic spreading allowing the onset of large epidemics whatever the spreading rate of the infection. In the paper, we show that disease propagation may be suppressed in…

Other Condensed Matter · Physics 2008-03-05 Zhongzhi Zhang , Shuigeng Zhou , Tao Zou , Jihong Guan

Identifying power-law scaling in real networks - indicative of preferential attachment - has proved controversial. Critics argue that measuring the temporal evolution of a network directly is better than measuring the degree distribution…

Networks with fat-tailed degree distributions are omnipresent across many scientific disciplines. Such systems are characterized by so-called hubs, specific nodes with high numbers of connections to other nodes. By this property, they are…

Disordered Systems and Neural Networks · Physics 2021-09-29 Claudia Merger , Timo Reinartz , Stefan Wessel , Carsten Honerkamp , Andreas Schuppert , Moritz Helias

Random Boolean networks, originally invented as models of genetic regulatory networks, are simple models for a broad class of complex systems that show rich dynamical structures. From a biological perspective, the most interesting networks…

Disordered Systems and Neural Networks · Physics 2009-11-07 Joshua E. S. Socolar , Stuart A. Kauffman

In this paper we introduce a model of spatial network growth in which nodes are placed at randomly selected locations on a unit square in $\mathbb{R}^2$, forming new connections to old nodes subject to the constraint that edges do not…

Physics and Society · Physics 2016-02-12 Garvin Haslett , Seth Bullock , Markus Brede

The parallel computational complexity or depth of growing network models is investigated. The networks considered are generated by preferential attachment rules where the probability of attaching a new node to an existing node is given by a…

Statistical Mechanics · Physics 2009-11-10 Benjamin Machta , Jonthan Machta

In order to better understand dynamical functions on amounts of natural and man-made complex systems, lots of researchers from a wide range of disciplines, covering statistic physics, mathematics, theoretical computer science, and so on,…

Social and Information Networks · Computer Science 2019-05-09 Fei Ma , Ding Wang , Ping Wang , Bing Yao

Inspired by empirical data on real world complex networks, the last few years have seen an explosion in proposed generative models to understand and explain observed properties of real world networks, including power law degree distribution…

Probability · Mathematics 2015-08-11 Shankar Bhamidi , Jimmy Jin , Andrew Nobel

Higher order clustering coefficients $C(x)$ are introduced for random networks. The coefficients express probabilities that the shortest distance between any two nearest neighbours of a certain vertex $i$ equals $x$, when one neglects all…

Disordered Systems and Neural Networks · Physics 2009-11-07 Agata Fronczak , Janusz A. Holyst , Maciej Jedynak , Julian Sienkiewicz

Relevance and importance are the main factors when humans build network connections. We propose an evolutionary network model based on preferential attachment(PA) considering these factors. We analyze and compute several important features…

Physics and Society · Physics 2014-12-25 Weituo Zhang , Chjan Lim

Learning the network structure underlying data is an important problem in machine learning. This paper introduces a novel prior to study the inference of scale-free networks, which are widely used to model social and biological networks.…

Machine Learning · Computer Science 2015-06-19 Qingming Tang , Siqi Sun , Jinbo Xu

It is suggested that the degree distribution for networks of the cell-metabolism for simple organisms reflects an ubiquitous randomness. This implies that natural selection has exerted no or very little pressure on the network degree…

Biological Physics · Physics 2008-03-05 Petter Minnhagen , Sebastian Bernhardsson

Extensive studies have been done to understand the principles behind architectures of real networks. Recently, evidences for hierarchical organization in many real networks have also been reported. Here, we present a new hierarchical model…

Other Condensed Matter · Physics 2007-05-23 J. C. Nacher , N. Ueda , M. Kanehisa , T. Akutsu

We derive the sampling properties of random networks based on weights whose pairwise products parameterize independent Bernoulli trials. This enables an understanding of many degree-based network models, in which the structure of realized…

Statistics Theory · Mathematics 2013-06-07 Sofia C. Olhede , Patrick J. Wolfe

It appeared recently that the classical random graph model used to represent real-world complex networks does not capture their main properties. Since then, various attempts have been made to provide accurate models. We study here a model…

Statistical Mechanics · Physics 2021-03-22 Jean-Loup Guillaume , Matthieu Latapy

We propose a general geometric growth model for pseudofractal scale-free web, which is controlled by two tunable parameters. We derive exactly the main characteristics of the networks: degree distribution, second moment of degree…

Statistical Mechanics · Physics 2007-05-23 Zhongzhi Zhang , Lili Rong , Shuigeng Zhou

The betweenness centrality of graphs using random walk paths instead of geodesics is studied. A scaling collapse with no adjustable parameters is obtained as the graph size $N$ is varied; the scaling curve depends on the graph model. A…

Physics and Society · Physics 2016-07-04 O. Narayan , I. Saniee

We define a statistical ensemble of non-degenerate graphs, i.e. graphs without multiple- and self-connections between nodes. The node degree distribution is arbitrary, but the nodes are assumed to be uncorrelated. This completes our earlier…

Statistical Mechanics · Physics 2009-11-07 Z. Burda , A. Krzywicki

Paper proposes a model of large networks based on a random preferential attachment graph with addition of complete subgraphs (cliques). The proposed model refers to models of random graphs following the nonlinear preferential attachment…

Social and Information Networks · Computer Science 2019-04-05 E. B. Yudin