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We study the synchronous dynamics of the Hopfield model when a random antisymmetric part is added to the otherwise symmetric synaptic matrix. We use a generating functional technique to derive analytical expressions for the order parameters…

Disordered Systems and Neural Networks · Physics 2007-05-23 Manoranjan P. Singh

We propose a conceptually novel method of reconstructing the topology of dynamical networks. By examining the correlation between the variable of one node and the derivative of another node, we derive a simple matrix equation yielding the…

Data Analysis, Statistics and Probability · Physics 2015-06-11 Zoran Levnajić

In many organisms the expression levels of each gene are controlled by the activation levels of known "Transcription Factors" (TF). A problem of considerable interest is that of estimating the "Transcription Regulation Networks" (TRN)…

Applications · Statistics 2010-11-09 Gareth M. James , Chiara Sabatti , Nengfeng Zhou , Ji Zhu

Using a generalized random recurrent neural network model, and by extending our recently developed mean-field approach [J. Aljadeff, M. Stern, T. Sharpee, Phys. Rev. Lett. 114, 088101 (2015)], we study the relationship between the network…

Disordered Systems and Neural Networks · Physics 2016-02-09 Johnatan Aljadeff , David Renfrew , Marina Vegué , Tatyana O. Sharpee

The human brain utilizes spikes for information transmission and dynamically reorganizes its network structure to boost energy efficiency and cognitive capabilities throughout its lifespan. Drawing inspiration from this spike-based…

Human-Computer Interaction · Computer Science 2025-02-20 Jiangrong Shen , Qi Xu , Gang Pan , Badong Chen

Complex network theory aims to model and analyze complex systems that consist of multiple and interdependent components. Among all studies on complex networks, topological structure analysis is of the most fundamental importance, as it…

Social and Information Networks · Computer Science 2010-09-15 Bo Yang , Jiming Liu

Many real-world systems are characterized by stochastic dynamical rules where a complex network of interactions among individual elements probabilistically determines their state. Even with full knowledge of the network structure and of the…

Physics and Society · Physics 2018-05-15 Filippo Radicchi , Claudio Castellano

Activity in coupled systems is often oscillatory, for example, the firing pattern of neuronal populations. Whereas these oscillations have been studied predominantly in local circuits, here we show how the topology of large-scale networks,…

Neurons and Cognition · Quantitative Biology 2014-05-15 Marcus Kaiser

It is shown that a Hopfield recurrent neural network exhibits a scaling regime, whose specific exponents depend on the number of parcels used and the decay length of the coupling strength. This scaling regime recovers the picture introduced…

Disordered Systems and Neural Networks · Physics 2025-02-17 Giorgio Gosti , Sauro Succi , Giancarlo Ruocco

Real-world complex systems such as ecological communities and neuron networks are essential parts of our everyday lives. These systems are composed of units which interact through intricate networks. The ability to predict sudden changes in…

Adaptation and Self-Organizing Systems · Physics 2019-07-05 Deniz Eroglu , Matteo Tanzi , Sebastian van Strien , Tiago Pereira

The full range of activity in a temporal network is captured in its edge activity data -- time series encoding the tie strengths or on-off dynamics of each edge in the network. However, in many practical applications, edge-level data are…

Social and Information Networks · Computer Science 2021-07-23 James P. Bagrow , Sune Lehmann

A computer model is described which is used to assess the dynamical complexity of a class of networks of spiking neurons with small-world properties. Networks are constructed by forming an initially segregated set of highly intra-connected…

Biological Physics · Physics 2009-11-13 Murray Shanahan

We characterize the connectivity structure of feed-forward, deep neural networks (DNNs) using network motif theory. To address whether a particular motif distribution is characteristic of the training task, or function of the DNN, we…

Machine Learning · Computer Science 2024-03-05 Olivia T. Zahn , Thomas L. Daniel , J. Nathan Kutz

Attractor networks are an influential theory for memory storage in brain systems. This theory has recently been challenged by the observation of strong temporal variability in neuronal recordings during memory tasks. In this work, we study…

Neurons and Cognition · Quantitative Biology 2021-12-02 Ulises Pereira-Obilinovic , Johnatan Aljadeff , Nicolas Brunel

An inverse procedure is proposed and tested which aims at recovering the a priori unknown functional and structural information from global signals of living brains activity. To this end we consider a Leaky-Integrate and Fire (LIF) model…

We introduce a spherical Hopfield-type neural network involving neurons and patterns that are continuous variables. We study both the thermodynamics and dynamics of this model. In order to have a retrieval phase a quartic term is added to…

Disordered Systems and Neural Networks · Physics 2009-11-10 D. Bolle , Th. M. Nieuwenhuizen , I. Perez Castillo , T. Verbeiren

We introduce a modern Hopfield network with continuous states and a corresponding update rule. The new Hopfield network can store exponentially (with the dimension of the associative space) many patterns, retrieves the pattern with one…

We consider $L$-directional associative memories, composed of $L$ Hopfield networks, displaying imitative Hebbian intra-network interactions and anti-imitative Hebbian inter-network interactions, where couplings are built over a set of…

Disordered Systems and Neural Networks · Physics 2025-04-11 Elena Agliari , Andrea Alessandrelli , Paulo Duarte Mourao , Alberto Fachechi

In an increasingly connected world, the resilience of networked dynamical systems is important in the fields of ecology, economics, critical infrastructures, and organizational behaviour. Whilst we understand small-scale resilience well,…

Adaptation and Self-Organizing Systems · Physics 2018-08-21 Giannis Moutsinas , Weisi Guo

We present a topological framework for analysing neural time series that integrates Transfer Entropy (TE) with directed Persistent Homology (PH) to characterize information flow in spiking neural systems. TE quantifies directional influence…

Neurons and Cognition · Quantitative Biology 2025-08-27 Dylan Peek , Siddharth Pritam , Matthew P. Skerritt , Stephan Chalup