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Photon counting detectors (PCDs) offer promising advancements in computed tomography (CT) imaging by enabling the quantification and 3D imaging of contrast agents and tissue types through multi-energy projections. However, the accuracy of…

Medical Physics · Physics 2023-10-18 Juan C. R. Luna , Mini Das

Machine learning has emerged as a powerful tool in materials discovery, enabling the rapid design of novel materials with tailored properties for countless applications, including in the context of energy and sustainability. To ensure the…

Computational predictions of mass spectra from molecules have enabled the discovery of clinically relevant metabolites. However, such predictive tools are still limited as they occupy one of two extremes, either operating (a) by fragmenting…

Quantitative Methods · Quantitative Biology 2023-12-05 Samuel Goldman , John Bradshaw , Jiayi Xin , Connor W. Coley

We present a simple, yet general, end-to-end deep neural network representation of the potential energy surface for atomic and molecular systems. This methodology, which we call Deep Potential, is "first-principle" based, in the sense that…

Computational Physics · Physics 2020-07-20 Jiequn Han , Linfeng Zhang , Roberto Car , Weinan E

The recent development of multidimensional ultrafast spectroscopy techniques calls for the introduction of computational schemes that allow for the simulation of such experiments and the interpretation of the corresponding results from a…

Mesoscale and Nanoscale Physics · Physics 2023-10-30 Jannis Krumland , Michele Guerrini , Antonietta De Sio , Christoph Lienau , Caterina Cocchi

The predictive accuracy of Machine Learning (ML) models of molecular properties depends on the choice of the molecular representation. Based on the postulates of quantum mechanics, we introduce a hierarchy of representations which meet…

Chemical Physics · Physics 2016-11-23 Bing Huang , O. Anatole von Lilienfeld

The energy spectra of unscattered neutrons produced by deuterium-deuterium and deuterium-tritium fusion reactions are an important diagnostic in High Energy Density Physics experiments as the spectra are sensitive to the velocities of…

Plasma Physics · Physics 2023-05-05 B. D. Appelbe , W. T. Taitano , A. J. Crilly , O. M. Mannion , C. J. Forrest , J. P. Chittenden

Spectral clustering is one of the most widely used techniques for extracting the underlying global structure of a data set. Compressed sensing and matrix completion have emerged as prevailing methods for efficiently recovering sparse and…

Numerical Analysis · Mathematics 2010-11-05 Blake Hunter , Thomas Strohmer

It has been hypothesized that some form of "modular" structure in artificial neural networks should be useful for learning, compositionality, and generalization. However, defining and quantifying modularity remains an open problem. We cast…

Machine Learning · Computer Science 2022-06-23 Richard D. Lange , David S. Rolnick , Konrad P. Kording

Spectral clustering has become a popular technique due to its high performance in many contexts. It comprises three main steps: create a similarity graph between N objects to cluster, compute the first k eigenvectors of its Laplacian matrix…

Data Structures and Algorithms · Computer Science 2016-05-24 Nicolas Tremblay , Gilles Puy , Remi Gribonval , Pierre Vandergheynst

In this study, we explore the potential of machine learning for modeling molecular electronic spectral intensities as a continuous function in a given wavelength range. Since presently available chemical space datasets provide excitation…

Chemical Physics · Physics 2022-08-02 Prakriti Kayastha , Sabyasachi Chakraborty , Raghunathan Ramakrishnan

Spectral clustering is a powerful method for finding structure in a dataset through the eigenvectors of a similarity matrix. It often outperforms traditional clustering algorithms such as $k$-means when the structure of the individual…

Numerical Analysis · Mathematics 2019-04-26 Paola Favati , Grazia Lotti , Ornella Menchi , Francesco Romani

The high spectral resolution R about 45,000 provided by IGRINS (Immersion Grating INfrared Spectrometer) at MacDonald Observatory and R 100,000 achieved by CRIRES (CRyogenic high-resolution InfraRed Echelle Spectrograph) at VLT (Very Large…

Atomic Physics · Physics 2019-09-30 E. Roueff , H. Abgrall , P. Czachorowski , K. Pachucki , M. Puchalski , J. Komasa

In the present work, we give an analytical non-perturbative treatment of mode-mode coupling and anharmonicity occurring in molecular vibrational systems analyzed by 2D-infrared spectroscopy. This analytical description allows a detailed…

Chemical Physics · Physics 2013-09-04 Kuo Kan Liang , Albert A. Villaeys

As with many parts of the natural sciences, machine learning interatomic potentials (MLIPs) are revolutionizing the modeling of molecular crystals. However, challenges remain for the accurate and efficient calculation of sublimation…

Computational Physics · Physics 2025-09-03 Flaviano Della Pia , Benjamin X. Shi , Venkat Kapil , Andrea Zen , Dario Alfè , Angelos Michaelides

The rotation vibration spectra of small molecules can be described mathematically completely. Unfortunately, no vivid interpretation of the observed transitions exists. A qualitative interpretation attempt is undertaken for symmetric top…

Physics Education · Physics 2007-05-23 Petra Schulz

SpectraPlot is a web-based application for simulating spectra of atomic and molecular gases. At the time this manuscript was written, SpectraPlot consisted of four primary tools for calculating: 1) atomic and molecular absorption spectra,…

Spectroscopic surveys require fast and efficient analysis methods to maximize their scientific impact. Here we apply a deep neural network architecture to analyze both SDSS-III APOGEE DR13 and synthetic stellar spectra. When our…

Instrumentation and Methods for Astrophysics · Physics 2018-02-21 Sebastien Fabbro , Kim Venn , Teaghan O'Briain , Spencer Bialek , Collin Kielty , Farbod Jahandar , Stephanie Monty

Kernel spectral clustering corresponds to a weighted kernel principal component analysis problem in a constrained optimization framework. The primal formulation leads to an eigen-decomposition of a centered Laplacian matrix at the dual…

Social and Information Networks · Computer Science 2014-12-03 Raghvendra Mall , Rocco Langone , Johan A. K. Suykens

Galaxy clusters, the largest clearly defined objects in our Universe, are ideal laboratories to study in detail the cosmic evolution of the intergalactic intracluster medium (ICM) and the cluster galaxy population. For the ICM, which is…

Cosmology and Nongalactic Astrophysics · Physics 2009-07-27 Hans Boehringer , Norbert Werner
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