Related papers: The Gapped $k$-Deck Problem

The problem of enumerating all connected induced subgraphs of a given order $k$ from a given graph arises in many practical applications: bioinformatics, information retrieval, processor design,to name a few. The upper bound on the number…

An independent set of a graph $G$ is a vertex subset $I$ such that there is no edge joining any two vertices in $I$. Imagine that a token is placed on each vertex of an independent set of $G$. The $\mathsf{TS}$- ($\mathsf{TS}_k$-)…

In this note we improve an algorithm from a recent paper by Bauer and Bennett for computing a function of Erd\"os that measures the minimal gap size $f(k)$ in the sequence of integers at least one of whose prime factors exceeds $k$. This…

In a reconfiguration problem, we are given two feasible solutions of a combinatorial problem and our goal is to determine whether it is possible to reconfigure one into the other, with the steps dictated by specific reconfiguration rules.…

Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…

Given a set S of integers whose sum is zero, consider the problem of finding a permutation of these integers such that: (i) all prefix sums of the ordering are nonnegative, and (ii) the maximum value of a prefix sum is minimized. Kellerer…

The sequence reconstruction problem for insertion/deletion channels has attracted significant attention owing to their applications recently in some emerging data storage systems, such as racetrack memories, DNA-based data storage. Our goal…

For a graph $G=(V,E)$ and a set $S\subseteq V(G)$ of size at least $2$, an $S$-Steiner tree $T$ is a subgraph of $G$ that is a tree with $S\subseteq V(T)$. Two $S$-Steiner trees $T$ and $T'$ are internally disjoint (resp. edge-disjoint) if…

Let $0<k\in\mathbb{Z}$. We zipper-merge integer compositions with sums $k$ and $k+1$, equal number of parts and initial entries equal at least to 1 and 2, respectively. This yields bitstrings with two initial zeros, $k-1$ remaining zeros…

Let $k$ be a positive integer and let $G$ be a graph with $n$ vertices. A connected $k$-subpartition of $G$ is a collection of $k$ pairwise disjoint sets (a.k.a. classes) of vertices in $G$ such that each set induces a connected subgraph.…

Genome rearrangements can be modeled as $k$-breaks, which break a genome at k positions and glue the resulting fragments in a new order. In particular, reversals, translocations, fusions, and fissions are modeled as $2$-breaks, and…

In the \textsc{Geodetic Set} problem, the input consists of a graph $G$ and a positive integer $k$. The goal is to determine whether there exists a subset $S$ of vertices of size $k$ such that every vertex in the graph is included in a…

We study a weaker formulation of the nullspace property which guarantees recovery of sparse signals from linear measurements by l_1 minimization. We require this condition to hold only with high probability, given a distribution on the…

The Minimum Size Tree Decomposition (MSTD) and Minimum Size Path Decomposition (MSPD) problems ask for a given n-vertex graph G and integer k, what is the minimum number of bags of a tree decomposition (respectively, path decomposition) of…

We introduce the following notion of compressing an undirected graph G with edge-lengths and terminal vertices $R\subseteq V(G)$. A distance-preserving minor is a minor G' (of G) with possibly different edge-lengths, such that $R\subseteq…

We study the Short Path Packing problem which asks, given a graph $G$, integers $k$ and $\ell$, and vertices $s$ and $t$, whether there exist $k$ pairwise internally vertex-disjoint $s$-$t$ paths of length at most $\ell$. The problem has…

The Steiner Tree problem is a classical problem in combinatorial optimization: the goal is to connect a set $T$ of terminals in a graph $G$ by a tree of minimum size. Karpinski and Zelikovsky (1996) studied the $\delta$-dense version of…

We study an "above guarantee" version of the {\sc Longest Path} problem in directed graphs: We are given a graph $G$, two vertices $s$ and $t$ of $G$, and a non-negative integer $k$, and the objective is to determine whether $G$ contains a…

A k-ranking of a graph G is a labeling of the vertices of G with values from 1,...,k such that any path joining two vertices with the same label contains a vertex having a higher label. The tree-depth of G is the smallest value of k for…

A vertex of degree one is called an end-vertex, and an end-vertex of a tree is called a leaf. A tree with at most $k$ leaves is called a $k$-ended tree. For a positive integer $k$, let $t_k$ be the order of a largest $k$-ended tree. Let…