Related papers: The Gapped $k$-Deck Problem

We introduce a new variant of the $k$-deck problem, which in its traditional formulation asks for determining the smallest $k$ that allows one to reconstruct any binary sequence of length $n$ from the multiset of its $k$-length…

For a given $n$, what is the smallest number $k$ such that every sequence of length $n$ is determined by the multiset of all its $k$-subsequences? This is called the $k$-deck problem for sequence reconstruction, and has been generalized to…

In the trace reconstruction problem, one seeks to reconstruct a binary string $s$ from a collection of traces, each of which is obtained by passing $s$ through a deletion channel. It is known that $\exp(\tilde O(n^{1/5}))$ traces suffice to…

The $k$-deck of a graph is its multiset of induced subgraphs on $k$ vertices. We prove that $n$-vertex graphs with maximum degree $2$ have the same $k$-decks if each cycle has at least $k+1$ vertices, each path component has at least $k-1$…

This study develops an algorithm to solve a variation of the Shortest Common Superstring (SCS) problem. There are two modifications to the base SCS problem. First, one string in the set S is allowed to have up to K mistakes, defined as not…

We consider two optimization problems related to finding dense subgraphs. The densest at-least-k-subgraph problem (DalkS) is to find an induced subgraph of highest average degree among all subgraphs with at least k vertices, and the densest…

Given a connected graph $G$ on $n$ vertices and a positive integer $k\le n$, a subgraph of $G$ on $k$ vertices is called a $k$-subgraph in $G$. We design combinatorial approximation algorithms for finding a connected $k$-subgraph in $G$…

Dense subgraph discovery is an important graph-mining primitive with a variety of real-world applications. One of the most well-studied optimization problems for dense subgraph discovery is the densest subgraph problem, where given an…

A modified $k$-deck of a graph $G$ is obtained by removing $k$ edges of $G$ in all possible ways, and adding $k$ (not necessarily new) edges in all possible ways. Krasikov and Roditty asked if it was possible to construct the usual $k$-edge…

In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…

The Shortest Common Superstring problem (SCS) consists, for a set of strings S = {s_1,...,s_n}, in finding a minimum length string that contains all s_i, 1<= i <= n, as substrings. While a 2+11/30 approximation ratio algorithm has recently…

Given a positive integer k, we investigate the class of numerical semigroups verifying the property that every two subsequent non gaps, smaller than the conductor, are spaced by at least k. These semigroups will be called k-sparse and…

Minimum $k$-Section denotes the NP-hard problem to partition the vertex set of a graph into $k$ sets of sizes as equal as possible while minimizing the cut width, which is the number of edges between these sets. When $k$ is an input…

Finding the longest common subsequence in $k$-length substrings (LCS$k$) is a recently proposed problem motivated by computational biology. This is a generalization of the well-known LCS problem in which matching symbols from two sequences…

The "Subset Sum problem" is a very well-known NP-complete problem. In this work, a top-k variation of the "Subset Sum problem" is considered. This problem has wide application in recommendation systems, where instead of k best objects the k…

Let $D$ be a set of positive integers. A $D$-diffsequence of length $k$ is a sequence of positive integers $a_1 < \cdots < a_k$ such that $a_{i+1}-a_i\in D$ for $i=1,\ldots,k-1$. For $D=\{2^i\mid i\in \mathbb{Z}_{\ge 0}\}$, it is known that…

The tree spanner problem for a graph $G$ is as follows: For a given integer $k$, is there a spanning tree $T$ of $G$ (called a tree $k$-spanner) such that the distance in $T$ between every pair of vertices is at most $k$ times their…

Let $k\geq2$ be an integer. A $k$-tree is a tree with maximum degree at most $k$. In this paper, we give a closure result on spanning $k$-trees of graphs with given minimum degree. Let $\delta\geq1$ be an integer, and $G$ be a connected…

Motivated by the Erdos-Szekeres convex polytope conjecture in $R^d$, we initiate the study of the following induced Ramsey problem for hypergraphs. Given integers $ n > k \geq 5$, what is the minimum integer $g_k(n)$ such that any…

The Shortest Superstring Problem (SSP) consists, for a set of strings S = {s_1,...,s_n}, to find a minimum length string that contains all s_i, 1 <= i <= k, as substrings. This problem is proved to be NP-Complete and APX-hard. Guaranteed…