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This paper studies the problem of embedding very large information networks into low-dimensional vector spaces, which is useful in many tasks such as visualization, node classification, and link prediction. Most existing graph embedding…

Machine Learning · Computer Science 2015-03-13 Jian Tang , Meng Qu , Mingzhe Wang , Ming Zhang , Jun Yan , Qiaozhu Mei

Analysis of single-cell RNA sequencing data is often conducted through network projections such as coexpression networks, primarily due to the abundant availability of network analysis tools for downstream tasks. However, this approach has…

Quantitative Methods · Quantitative Biology 2025-12-24 Wan He , Daniel I. Bolnick , Samuel V. Scarpino , Tina Eliassi-Rad

Hypergraphs extend traditional networks by capturing multi-way or group interactions. Given the complexity of hypergraph data and the wide range of methodology available for pairwise network analysis, hypergraph data is often projected onto…

Social and Information Networks · Computer Science 2025-06-23 Timothy LaRock , Renaud Lambiotte

Listing triangles is a fundamental graph problem with many applications, and large graphs require fast algorithms. Vertex ordering allows the orientation of edges from lower to higher vertex indices, and state-of-the-art triangle listing…

Data Structures and Algorithms · Computer Science 2022-11-03 Fabrice Lécuyer , Louis Jachiet , Clémence Magnien , Lionel Tabourier

We introduce a novel algorithm to perform graph clustering in the edge streaming setting. In this model, the graph is presented as a sequence of edges that can be processed strictly once. Our streaming algorithm has an extremely low memory…

Machine Learning · Computer Science 2017-12-13 Alexandre Hollocou , Julien Maudet , Thomas Bonald , Marc Lelarge

Graph neural networks have achieved state-of-the-art accuracy for graph node classification. However, GNNs are difficult to scale to large graphs, for example frequently encountering out-of-memory errors on even moderate size graphs. Recent…

Machine Learning · Computer Science 2022-10-26 Ziyuan Wang , Feiming Yang , Rui Fan

Graph representation learning based on graph neural networks (GNNs) can greatly improve the performance of downstream tasks, such as node and graph classification. However, the general GNN models do not aggregate node information in a…

Machine Learning · Computer Science 2020-07-30 Fei Ding , Xiaohong Zhang , Justin Sybrandt , Ilya Safro

In this paper, we study semi-supervised graph classification, which aims at accurately predicting the categories of graphs in scenarios with limited labeled graphs and abundant unlabeled graphs. Despite the promising capability of graph…

Machine Learning · Computer Science 2024-05-29 Wei Ju , Zhengyang Mao , Siyu Yi , Yifang Qin , Yiyang Gu , Zhiping Xiao , Yifan Wang , Xiao Luo , Ming Zhang

Graph analysis performs many random reads and writes, thus, these workloads are typically performed in memory. Traditionally, analyzing large graphs requires a cluster of machines so the aggregate memory exceeds the graph size. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-01-27 Da Zheng , Disa Mhembere , Randal Burns , Joshua Vogelstein , Carey E. Priebe , Alexander S. Szalay

A heterogeneous graph consists of different vertices and edges types. Learning on heterogeneous graphs typically employs meta-paths to deal with the heterogeneity by reducing the graph to a homogeneous network, guide random walks or capture…

Machine Learning · Statistics 2023-03-06 See Hian Lee , Feng Ji , Wee Peng Tay

Over the recent years, Graph Neural Networks have become increasingly popular in network analytic and beyond. With that, their architecture noticeable diverges from the classical multi-layered hierarchical organization of the traditional…

Machine Learning · Computer Science 2021-05-17 Stanislav Sobolevsky

We consider hypergraph network design problems where the goal is to construct a hypergraph that satisfies certain connectivity requirements. For graph network design problems where the goal is to construct a graph that satisfies certain…

Data Structures and Algorithms · Computer Science 2024-02-19 Kristóf Bérczi , Karthekeyan Chandrasekaran , Tamás Király , Shubhang Kulkarni

Hypergraph neural networks (HGNN) have recently become attractive and received significant attention due to their excellent performance in various domains. However, most existing HGNNs rely on first-order approximations of hypergraph…

Artificial Intelligence · Computer Science 2024-01-11 Maolin Wang , Yaoming Zhen , Yu Pan , Yao Zhao , Chenyi Zhuang , Zenglin Xu , Ruocheng Guo , Xiangyu Zhao

We study point-to-point distance estimation in hypergraphs, where the query is parameterized by a positive integer s, which defines the required level of overlap for two hyperedges to be considered adjacent. To answer s-distance queries, we…

Data Structures and Algorithms · Computer Science 2024-03-20 Giulia Preti , Gianmarco De Francisci Morales , Francesco Bonchi

Neural forecasting of spatiotemporal time series drives both research and industrial innovation in several relevant application domains. Graph neural networks (GNNs) are often the core component of the forecasting architecture. However, in…

Machine Learning · Computer Science 2023-02-21 Andrea Cini , Ivan Marisca , Filippo Maria Bianchi , Cesare Alippi

Most real-world graphs exhibit a hierarchical structure, which is often overlooked by existing graph generation methods. To address this limitation, we propose a novel graph generative network that captures the hierarchical nature of graphs…

Machine Learning · Computer Science 2026-01-01 Mahdi Karami

Graph embedding techniques have attracted growing interest since they convert the graph data into continuous and low-dimensional space. Effective graph analytic provides users a deeper understanding of what is behind the data and thus can…

Machine Learning · Computer Science 2022-01-21 Azita Nouri , Philip E. Davis , Pradeep Subedi , Manish Parashar

Higher-order graph neural networks (HOGNNs) and the related architectures from Topological Deep Learning are an important class of GNN models that harness polyadic relations between vertices beyond plain edges. They have been used to…

We propose a novel sequence prediction method for sequential data capturing node traversals in graphs. Our method builds on a statistical modelling framework that combines multiple higher-order network models into a single multi-order…

Machine Learning · Computer Science 2023-10-25 Christoph Gote , Giona Casiraghi , Frank Schweitzer , Ingo Scholtes

We consider dataflow architecture for two classes of computations which admit taking linear combinations of execution runs: probabilistic sampling and generalized animation. We improve the earlier technique of almost continuous program…

Programming Languages · Computer Science 2016-01-12 Michael Bukatin , Steve Matthews
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