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We study a nonlinear coupled parabolic system with non-local drift terms modeling at the continuum level the inter-species interaction within a ternary mixture that allows the evaporation of one of the species. In the absence of…

Analysis of PDEs · Mathematics 2023-11-17 Rainey Lyons , Emilio N. M. Cirillo , Adrian Muntean

Complex systems with tightly coadapted parts frequently appear in living systems and are difficult to account for through Darwinian evolution, that is random variation and natural selection, if the constituent parts are independently coded…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 John F. McGowan , Ph. D

Droplet formation has emerged as an essential concept for the spatiotemporal organisation of biomolecules in cells. However, classical descriptions of droplet dynamics based on passive liquid-liquid phase separation cannot capture the…

Biological Physics · Physics 2025-11-14 David Zwicker , Oliver W. Paulin , Cathelijne ter Burg

Microphase separation of membrane components is thought to play an important role in many physiological processes, from cell signaling to endocytosis and cellular trafficking. Here, we study how variations in the membrane composition can be…

Subcellular Processes · Quantitative Biology 2015-05-20 Pierre Sens , Matthew S. Turner

We study the joint effect of the non-linearity of interactions and noise on coevolutionary dynamics. We choose the coevolving voter model as a prototype framework for this problem. By numerical simulations and analytical approximations we…

Physics and Society · Physics 2020-09-28 Tomasz Raducha , Maxi San Miguel

The evolution of two qubits coupled by a general nonlocal interaction is studied in two distinct regimes. In the first regime the purity of the individual qubits is interchanged through the entanglement shared by the two. We illustrate how…

Quantum Physics · Physics 2007-05-23 Cesar A. Rodriguez , Anil Shaji , E. C. G. Sudarshan

Time-discrete dynamical systems on a finite state space have been used with great success to model natural and engineered systems such as biological networks, social networks, and engineered control systems. They have the advantage of being…

Combinatorics · Mathematics 2015-03-17 Alan Veliz-Cuba , Reinhard Laubenbacher

The nonexponential relaxation ocurring in complex dynamics manifested in a wide variety of systems is analyzed through a simple model of diffusion in phase space. It is found that the inability of the system to find its equilibrium state in…

Statistical Mechanics · Physics 2009-11-10 A. Perez-Madrid

Understanding the stability of complex communities is a central focus in ecology, many important theoretical advancements have been made to identify drivers of ecological stability. However, previous results often rely on the…

Populations and Evolution · Quantitative Biology 2025-04-04 Shuaiying Wang , Yuguang Yang , Aming Li

Controlled quantum systems such as ultracold atoms can provide powerful platforms to study non-equilibrium dynamics of closed many-body quantum systems, especially since a complete theoretical description is generally challenging. In this…

Quantum Gases · Physics 2017-11-15 M. Aidelsburger , J. L. Ville , R. Saint-Jalm , S. Nascimbène , J. Dalibard , J. Beugnon

The cellular cytoplasm is organized into compartments. Phase separation is a simple manner to create membrane-less compartments in order to confine and localize particles like proteins. In many cases these particles are bound to fluctuating…

Statistical Mechanics · Physics 2020-09-16 G. David , J. -C. Walter , C. P. Broedersz , J. Dorignac , F. Geniet , A. Parmeggiani , N. -O. Walliser , J. Palmeri

Starting with Darwin, biologists have asked how populations evolve from a low fitness state that is evolutionarily stable to a high fitness state that is not. Specifically of interest is the emergence of cooperation and multicellularity…

Populations and Evolution · Quantitative Biology 2015-11-10 Dervis Can Vural , Alexander Isakov , L. Mahadevan

The gradual accumulation of damage and dysregulation during the aging of living organisms can be quantified. Even so, the aging process is complex and has multiple interacting physiological scales -- from the molecular to cellular to whole…

Quantitative Methods · Quantitative Biology 2021-05-06 Spencer Farrell , Garrett Stubbings , Kenneth Rockwood , Arnold Mitnitski , Andrew Rutenberg

Much of our mechanistic understanding of the functions of biological macromolecules is based on static structural experiments, which can be modelled either as single structures or conformational ensembles. While these provide us with…

Biomolecules · Quantitative Biology 2025-10-02 Daria Gusew , Carl G. Henning Hansen , Kresten Lindorff-Larsen

Phase separation of multicomponent liquid mixtures plays an integral part in many processes ranging from industry to cellular biology. In many cases the morphology of coexisting phases is crucially linked to the function of the separated…

Soft Condensed Matter · Physics 2020-11-25 Sheng Mao , Milena S. Chakraverti-Wuerthwein , Hunter Gaudio , Andrej Kosmrlj

Scale independence is a ubiquitous feature of complex systems which implies a highly skewed distribution of resources with no characteristic scale. Research has long focused on why systems as varied as protein networks, evolution and stock…

Physics and Society · Physics 2016-02-08 Laurent Hébert-Dufresne , Antoine Allard , Jean-Gabriel Young , Louis J. Dubé

A general system of particles (of one or several species) on a one dimensional lattice with boundaries is considered. Two general behaviors of such systems are investigated. The stationary behavior of the system, and the dominant way of the…

Statistical Mechanics · Physics 2015-06-24 Mohammad Khorrami , Amir Aghamohammadi

The possibility that evolutionary forces -- together with a few fundamental factors such as thermodynamic constraints, specific computational features enabling information processing, and ecological processes -- might constrain the logic of…

Biological Physics · Physics 2025-12-30 Manlio De Domenico

We report a computer simulation study of a model gel-former obtained by modifying the three-body interactions of the Stillinger-Weber potential for silicon. This modification reduces the average coordination number and consequently shifts…

Disordered Systems and Neural Networks · Physics 2015-05-27 Shibu Saw , Niels L. Ellegaard , Walter Kob , Srikanth Sastry

Understanding systems level behaviour of many interacting agents is challenging in various ways, here we'll focus on the how the interaction between components can lead to hierarchical structures with different types of dynamics, or…

Populations and Evolution · Quantitative Biology 2018-12-26 Henrik Jeldtoft Jensen