Related papers: Characterizing Planar Tanglegram Layouts and Appli…
Phylogenetic networks are leaf-labelled directed acyclic graphs that are used to describe non-treelike evolutionary histories and are thus a generalization of phylogenetic trees. The hybridization number of a phylogenetic network is the sum…
In this paper, we investigate the weighted tree augmentation problem (TAP), where the goal is to augment a tree with a minimum cost set of edges such that the graph becomes two edge connected. First we show that in weighted TAP, we can…
We introduce a method for creating a special type of tree, called a tree position, from a weighted graph. Leaves of the tree correspond to vertices of the original graph, and the tree edges contain information which can be used to partition…
Given a bipartite graph $G=(V_b,V_r,E)$, the $2$-Level Quasi-Planarity problem asks for the existence of a drawing of $G$ in the plane such that the vertices in $V_b$ and in $V_r$ lie along two parallel lines $\ell_b$ and $\ell_r$,…
A graph is near-planar if it can be obtained from a planar graph by adding an edge. We show the surprising fact that it is NP-hard to compute the crossing number of near-planar graphs. A graph is 1-planar if it has a drawing where every…
The innumerable shapes of plant leaves present a challenge to the explanatory power of biophysical theory. A model is needed that can produce these shapes with a small set of parameters. This paper presents a simple model of leaf shape…
A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…
The central discovery of $2d$ conformal theory was holomorphic factorization, which expressed correlation functions through bilinear combinations of conformal blocks, which are easily cut and joined without a need to sum over the entire…
In the longest plane spanning tree problem, we are given a finite planar point set $\mathcal{P}$, and our task is to find a plane (i.e., noncrossing) spanning tree for $\mathcal{P}$ with maximum total Euclidean edge length. Despite more…
In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…
This paper proposes a novel algorithm for the problem of structural image segmentation through an interactive model-based approach. Interaction is expressed in the model creation, which is done according to user traces drawn over a given…
Given an undirected planar graph G with n vertices and a set S of n points inside a simple polygon P, a point-set embedding of G on S is a planar drawing of G such that each vertex is mapped to a distinct point of S and the edges are…
We define a minimization problem for paths on planar graphs that, on the honeycomb lattice, is equivalent to the exploration path of the critical site percolation and than has the same scaling limit of SLE_6. We numerically study this model…
Poulalhon and Schaeffer introduced an elegant method to linearly encode a planar triangulation optimally. The method is based on performing a special depth-first search algorithm on a particular orientation of the triangulation: the minimal…
The operation of transforming one spanning tree into another by replacing an edge has been considered widely, both for general and planar straight-line graphs. For the latter, several variants have been studied (e.g., edge slides and edge…
Tangle structure trees, introduced in [3], offer a unified data structure that displays all the tangles of a graph or data set together with certificates for the non-existence of any other tangles, either locally or overall. In this paper…
A rooted phylogenetic network is a directed acyclic graph with a single root, whose sinks correspond to a set of species. As such networks are useful for representing the evolution of species that have undergone reticulate evolution, there…
We define a special case of tree decompositions for planar graphs that respect a given embedding of the graph. We study the analogous width of the resulting decomposition we call the embedded-width of a plane graph. We show both upper…
We introduce the problem Synchronized Planarity. Roughly speaking, its input is a loop-free multi-graph together with synchronization constraints that, e.g., match pairs of vertices of equal degree by providing a bijection between their…
A simultaneous embedding with fixed edges (SEFE) of two planar graphs $R$ and $B$ is a pair of plane drawings of $R$ and $B$ that coincide when restricted to the common vertices and edges of $R$ and $B$. We show that whenever $R$ and $B$…